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nucleoprotein

Euk-Vir

Ghana_virus

nucleoprotein__YP_009091833__Ghana_virus__2847089

Identity

Accession:
YP_009091833 ↗
Protein ID:
nucleoprotein
Kingdom:
euk

Quality

73.3 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Paramyxoviridae› Henipavirus› Ghana_virus

TaxID: 2847089

Cluster

View cluster (62 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 30-156_213-224
PDB
Domain cluster: rep: nucleocapsid_protein__YP_009177597__Phocine_morbillivirus__11240__D32-140
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00973.26 best Paramyxo_ncap 104.5 9.20e-30 99.3% 32.5%
D2 medium residues 157-212
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00973.26 best Paramyxo_ncap 81.1 1.10e-22 100.0% 13.5%
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2zc2A00 1.10.10.630 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DnaD domain-like 0.70 48.0 4.30e-01 73.2% 52.0%
3q5dA02 1.20.58.420 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP 0.69 58.0 4.97e-01 100.0% 80.4%
3nkzA00 1.20.58.380 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Flagellar protein flit. 0.65 50.0 4.24e-01 85.7% 57.7%
3q1pA01 6.10.250.1120 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.65 41.0 4.69e-01 96.4% 92.3%
6d5xA00 1.20.1200.10 Mainly Alpha › Up-down Bundle › Hypothetical Protein Ta1238; Chain: A; › Cobalamin adenosyltransferase-like 0.65 49.0 3.62e-01 82.1% 84.8%
1hr5A00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.64 44.0 4.72e-01 91.1% 85.4%
1kblA05 1.20.80.30 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › 0.63 44.0 3.84e-01 78.6% 47.2%
1chuA03 1.20.58.100 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain 0.62 55.0 4.74e-01 100.0% 80.7%
1gvnA00 1.10.8.130 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.62 46.0 4.08e-01 83.9% 77.0%
1jalA03 1.10.150.300 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Obg-related GTPase Ych/YyaF, coiled-coil domain 0.62 48.0 4.34e-01 89.3% 92.6%
1pd3A00 1.10.287.230 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.61 48.0 4.95e-01 91.1% 94.4%
3na7A00 1.10.287.1490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.61 50.0 3.31e-01 91.1% 69.6%
4fppB01 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.61 46.0 4.32e-01 85.7% 90.1%
2waqQ00 6.20.450.10 Special › Other non-globular › DNA Excision Repair, Uvrb; Chain A › 0.60 40.0 4.24e-01 78.6% 86.7%
1e52A00 4.10.860.10 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain 0.59 43.0 4.35e-01 89.3% 78.6%
2zxeA02 1.20.1110.10 Mainly Alpha › Up-down Bundle › Calcium-transporting ATPase, transmembrane domain › Calcium-transporting ATPase, transmembrane domain 0.59 48.0 2.96e-01 100.0% 20.0%
3mggA02 6.10.140.1580 Special › Helix non-globular › Helix Hairpins › 0.58 43.0 3.80e-01 83.9% 53.9%
2avuB00 1.10.4000.10 Mainly Alpha › Orthogonal Bundle › Flagellar transcriptional activator fold › Flagellar transcriptional activator FlhD 0.56 50.0 4.03e-01 98.2% 63.5%
3qslA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.55 44.0 3.03e-01 89.3% 53.9%
2lvsA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.53 38.0 3.87e-01 100.0% 78.6%
4nh0B01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 46.0 2.90e-01 100.0% 25.2%
2xgsB01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.53 40.0 3.73e-01 83.9% 63.0%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2756727 566.1.1.1 ↗ alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related › Paramyxo_ncap 0.96 91.0 5.28e-01 100.0% 14.2%
4943787 2006.1.4.8 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_5 0.70 55.0 3.81e-01 87.5% 27.9%
3278617 5063.1.1.0 ↗ alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK 0.68 50.0 5.21e-01 85.7% 94.0%
3223055 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.65 54.0 3.00e-01 100.0% 13.0%
3606138 6132.1.1.0 ↗ alpha bundles › Nudix hydrolase N-terminal dimerization domain › Nudix hydrolase N-terminal dimerization domain › Nudix hydrolase N-terminal dimerization domain 0.65 51.0 5.29e-01 100.0% 98.0%
3602612 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.64 47.0 4.45e-01 89.3% 64.3%
4340554 3877.1.1.1 ↗ alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC › 60KD_IMP 0.64 52.0 3.44e-01 92.9% 22.4%
1095885 6128.1.1.0 ↗ 0.64 48.0 4.70e-01 91.1% 74.6%
4616055 5059.1.1.2 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › Multi_Drug_Res 0.62 44.0 3.70e-01 80.4% 41.8%
3451935 192.8.1.359 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › DUF641 0.60 48.0 4.84e-01 89.3% 92.7%
3556027 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.60 48.0 4.22e-01 89.3% 61.2%
3504819 192.17.1.6 ↗ alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like › CC2D1A-B_DM14 0.59 43.0 4.14e-01 89.3% 67.7%
3902100 3291.1.1.0 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.59 48.0 4.24e-01 91.1% 62.4%
3855461 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.59 48.0 4.21e-01 91.1% 62.4%
5040661 605.1.1.1 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.58 45.0 4.24e-01 89.3% 74.3%
3724838 192.7.1.0 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.58 44.0 4.14e-01 91.1% 67.1%
3626639 109.4.1.1324 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › P4Ha_N, TPR_P4H 0.57 50.0 3.52e-01 100.0% 95.0%
3620935 109.4.1.1324 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › P4Ha_N, TPR_P4H 0.57 49.0 3.47e-01 98.2% 85.0%
3184927 568.1.1.0 ↗ few secondary structure elements › p8-MTCP1-related › p8-MTCP1-related › p8-MTCP1-related 0.55 39.0 4.06e-01 83.9% 95.6%
D3 medium residues 225-275
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00973.26 best Paramyxo_ncap 76.9 2.10e-21 100.0% 12.8%
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4od8D00 6.10.140.1880 Special › Helix non-globular › Helix Hairpins › 0.70 51.0 5.13e-01 80.4% 82.4%
1tigA00 3.30.110.10 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Translation initiation factor 3 (IF-3), C-terminal domain 0.67 48.0 4.10e-01 78.4% 92.0%
7ztbB01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.65 49.0 3.55e-01 86.3% 93.9%
8hk0B03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.65 50.0 3.74e-01 86.3% 42.8%
1s35A01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.65 49.0 3.91e-01 82.4% 91.1%
7tj9A01 1.20.120.350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C 0.64 48.0 3.78e-01 80.4% 55.7%
3bujA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.63 51.0 3.08e-01 92.2% 15.6%
1hqoA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.63 48.0 3.67e-01 86.3% 96.2%
4cclA02 3.40.366.30 Alpha Beta › 3-Layer(aba) Sandwich › Malonyl-Coenzyme A Acyl Carrier Protein; domain 2 › 50S ribosomal protein L16 arginine hydroxylase; Chain A, Domain 2 0.63 48.0 3.34e-01 84.3% 58.3%
3axjB02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.62 48.0 4.11e-01 86.3% 85.9%
1szhA02 1.10.150.370 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Caenorhabditis elegans Her-1, C-terminal domain 0.61 47.0 4.03e-01 84.3% 78.0%
2cwoA01 1.20.58.1200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › RNA silencing suppressor P21, N-terminal domain 0.61 43.0 3.91e-01 76.5% 58.1%
1br0A00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 48.0 3.70e-01 88.2% 84.2%
4uelA02 1.20.58.860 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 45.0 4.01e-01 78.4% 63.9%
2kw6A00 6.10.140.1300 Special › Helix non-globular › Helix Hairpins › 0.61 49.0 4.63e-01 94.1% 92.3%
1txuA01 1.10.246.120 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.60 49.0 4.06e-01 92.2% 90.4%
1m62A00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.60 49.0 4.12e-01 90.2% 85.1%
4jfcA02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.60 45.0 4.41e-01 84.3% 82.1%
2gsvA00 6.10.140.40 Special › Helix non-globular › Helix Hairpins › 0.60 43.0 3.95e-01 76.5% 91.0%
3eabE00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.60 44.0 3.78e-01 80.4% 66.3%
4fxdA04 3.90.1600.10 Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain 0.60 46.0 3.27e-01 82.4% 39.9%
1ylmA00 1.20.120.580 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › bsu32300-like 0.59 50.0 3.64e-01 94.1% 43.7%
4fzwA02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.59 44.0 4.35e-01 86.3% 77.6%
4h33A00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.59 47.0 3.94e-01 90.2% 76.9%
2gv9A05 1.10.287.690 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain 0.59 43.0 4.10e-01 82.4% 67.8%
3cx5A02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.59 49.0 3.28e-01 100.0% 45.3%
1j1jA02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.58 42.0 3.62e-01 78.4% 84.7%
1qsdA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 45.0 3.57e-01 84.3% 42.2%
1nt2B02 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.57 43.0 4.00e-01 82.4% 65.7%
2y4tA02 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.57 42.0 4.25e-01 84.3% 78.8%
3qxzA02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.57 41.0 4.05e-01 84.3% 78.3%
2pohA02 6.10.140.940 Special › Helix non-globular › Helix Hairpins › 0.56 45.0 3.91e-01 88.2% 64.9%
2q0oC00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.56 46.0 3.84e-01 90.2% 57.0%
1sb7A02 3.30.2340.10 Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › TruD, insertion domain 0.56 43.0 3.40e-01 98.0% 81.6%
2kj9A00 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.55 45.0 3.57e-01 96.1% 59.3%
1vpwA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.55 38.0 3.71e-01 80.4% 66.7%
7ce1A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.54 39.0 3.92e-01 80.4% 75.0%
2iexA02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.52 39.0 3.95e-01 88.2% 84.3%
1vb5A01 1.20.120.420 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 0.52 41.0 3.42e-01 88.2% 76.6%
8b6jF01 1.10.287.20 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Ubiquinol-cytochrome C reductase hinge domain 0.51 38.0 3.60e-01 94.1% 65.7%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3177312 633.23.1.22 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › MARVEL 0.67 51.0 3.72e-01 82.4% 74.3%
3822870 605.1.1.169 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › TMEM120A-B 0.67 45.0 3.57e-01 70.6% 53.3%
3782282 2498.1.1.36 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › WLM 0.65 45.0 3.22e-01 72.5% 62.9%
3942983 101.1.4.8 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › Phage_CP76 0.64 49.0 3.56e-01 84.3% 48.0%
3380124 109.4.1.1266 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Arm, ARM_PUB 0.64 53.0 3.25e-01 100.0% 33.2%
4977416 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.64 46.0 2.97e-01 76.5% 20.5%
3270445 633.21.1.22 ↗ alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › COPI_assoc 0.64 48.0 3.78e-01 84.3% 88.7%
3571018 109.4.1.1138 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SCAI 0.63 53.0 3.51e-01 98.0% 69.3%
3181110 5086.1.1.110 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HisKA 0.63 45.0 3.70e-01 76.5% 41.1%
3845513 7575.1.1.8 ↗ a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like › SCAI 0.63 53.0 3.50e-01 98.0% 69.3%
3629808 3291.1.1.130 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › CHDCT2 0.62 46.0 3.77e-01 78.4% 54.4%
3683912 192.7.1.0 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.62 50.0 3.89e-01 92.2% 58.3%
4075864 192.6.1.0 ↗ alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain 0.62 44.0 4.38e-01 78.4% 72.7%
4021948 3343.1.1.2 ↗ alpha complex topology › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › GCP_C_terminal,GCP_N_terminal 0.61 52.0 2.92e-01 98.0% 31.9%
3428894 604.5.1.39 ↗ alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PF26581 0.61 49.0 3.61e-01 90.2% 35.7%
3779711 192.8.1.0 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.60 46.0 2.70e-01 82.4% 11.0%
3928838 103.4.1.0 ↗ alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein 0.60 44.0 3.73e-01 72.5% 57.5%
3801220 206.1.1.8 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PI3_PI4_kinase,FATC 0.60 50.0 2.99e-01 98.0% 58.9%
3972755 601.1.2.99 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › DAGK_prokar 0.60 42.0 3.27e-01 76.5% 36.4%
3389713 174.1.1.29 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › DUF4728 0.60 49.0 3.65e-01 94.1% 93.6%
3171100 603.1.1.100 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF27017 0.59 47.0 3.83e-01 90.2% 50.0%
4983663 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.59 44.0 3.80e-01 82.4% 52.4%
3597250 3843.1.1.0 ↗ alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K 0.59 42.0 3.19e-01 74.5% 30.1%
4174058 3922.1.1.154 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › GrpE 0.58 45.0 3.60e-01 86.3% 45.5%
3404270 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.58 42.0 3.19e-01 78.4% 60.0%
3543713 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 45.0 3.80e-01 88.2% 54.4%
3998755 11.12.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD,Neur_chan_memb 0.57 48.0 2.95e-01 94.1% 16.8%
3839497 150.5.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.56 44.0 3.69e-01 84.3% 76.5%
3619662 192.12.1.3 ↗ alpha bundles › Long alpha-hairpin › Transcriptional repressor TraM › Transcriptional repressor TraM › DUF747 0.56 46.0 3.99e-01 92.2% 61.3%
4018180 4121.1.1.0 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.55 47.0 3.01e-01 98.0% 85.9%
3219759 174.1.1.0 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.54 42.0 3.14e-01 86.3% 65.9%
3251093 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.53 43.0 3.35e-01 90.2% 40.0%
3890044 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.53 42.0 3.90e-01 90.2% 72.1%
3184698 3291.1.1.0 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.52 41.0 3.51e-01 90.2% 52.2%
D4 medium residues 276-413
PDB
Domain cluster: rep: nucleocapsid_protein__NP_054707__Mumps_orthorubulavirus__2560602__D281-403
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00973.26 best Paramyxo_ncap 205.4 2.00e-60 90.6% 30.8%