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nucleoprotein

Euk-Vir

Culex_tritaeniorhynchus_rhabdovirus

nucleoprotein__YP_009094319__Culex_tritaeniorhynchus_rhabdovirus__936308

Identity

Accession:: YP_009094319 ↗
Protein ID:: nucleoprotein
Kingdom:: euk

Quality

76.3 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Rhabdoviridae› Merhavirus› Culex_tritaeniorhynchus_rhabdovirus

TaxID: 936308

Cluster

View cluster (34 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 34-221

PDB

Domain cluster: rep: nucleocapsid_protein__YP_008686596__Drosophila_obscura_sigmavirus_10A__666962__D36-146_214-247

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00945.24 best	Rhabdo_ncap	65.3	7.30e-18	99.5%	41.9%

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2gttC01	1.10.3570.10	Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like fold › Rhabdovirus nucleocapsid protein like domain	0.86	80.0	7.99e-01	97.3%	100.0%
3hhwK01	1.10.3570.10	Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like fold › Rhabdovirus nucleocapsid protein like domain	0.80	74.0	7.55e-01	96.8%	100.0%
3lcnB00	1.10.340.40	Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain	0.55	23.0	3.08e-01	71.8%	71.1%
1u3dA02	1.25.40.80	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.52	27.0	3.13e-01	95.7%	66.4%
3feyA02	1.25.40.180	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.51	36.0	3.65e-01	97.3%	69.8%
3cl3A02	1.10.533.10	Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas	0.51	26.0	3.53e-01	87.2%	100.0%

ECOD (12)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4846751	566.2.1.1 ↗	alpha complex topology › P40 nucleoprotein-like › Rhabdovirus nucleocapsid protein › Rhabdovirus nucleocapsid protein › Rhabdo_ncap	0.87	84.0	7.17e-01	100.0%	72.1%
2992377	566.2.1.1 ↗	alpha complex topology › P40 nucleoprotein-like › Rhabdovirus nucleocapsid protein › Rhabdovirus nucleocapsid protein › Rhabdo_ncap	0.87	83.0	6.44e-01	100.0%	53.9%
2966640	566.2.1.1 ↗	alpha complex topology › P40 nucleoprotein-like › Rhabdovirus nucleocapsid protein › Rhabdovirus nucleocapsid protein › Rhabdo_ncap	0.84	81.0	6.10e-01	100.0%	47.2%
3484709	109.4.1.1140 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_PEP5_VPS11	0.59	32.0	3.04e-01	94.1%	42.7%
3395524	601.21.1.2 ↗	alpha bundles › Four-helical up-and-down bundle › FAD-dependent thiol oxidase › FAD-dependent thiol oxidase › Evr1_Alr,FAD_SOX	0.59	42.0	3.74e-01	71.3%	95.6%
3778370	109.4.1.35 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT,HEAT_2	0.55	34.0	3.12e-01	94.7%	45.7%
3264719	109.4.1.127 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MIF4G_like	0.55	35.0	3.49e-01	92.6%	60.5%
4027242	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.54	34.0	2.90e-01	94.1%	38.4%
3504009	108.1.1.0 ↗	alpha arrays › EF-hand › EF-hand-related › EF-hand	0.54	20.0	2.91e-01	73.4%	71.8%
4435347	6035.1.1.2 ↗	alpha bundles › Primase helical domain › Primase helical domain › Primase helical domain › RepB_primase_C	0.53	27.0	3.45e-01	76.1%	85.0%
5012503	186.1.1.0 ↗	alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N	0.51	27.0	3.59e-01	74.5%	96.8%
3166729	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.51	32.0	2.94e-01	74.5%	45.9%

D2 medium residues 223-346_411-472

PDB

Domain cluster: rep: nucleoprotein__YP_009094365__Almpiwar_virus__318843__D225-426

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00945.24 best	Rhabdo_ncap	79.2	4.40e-22	67.7%	29.3%

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2gicD02	1.10.3610.10	Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like › Nucleoprotein	0.93	86.0	8.42e-01	95.2%	100.0%
2gttJ02	1.10.3610.10	Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like › Nucleoprotein	0.88	81.0	8.06e-01	95.2%	100.0%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2966640	566.2.1.1 ↗	alpha complex topology › P40 nucleoprotein-like › Rhabdovirus nucleocapsid protein › Rhabdovirus nucleocapsid protein › Rhabdo_ncap	0.90	85.0	6.34e-01	96.8%	46.0%
5026719	613.1.1.1 ↗	alpha complex topology › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › tRNA-synt_2c	0.52	39.0	3.74e-01	78.0%	85.9%