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nucleoprotein
Euk-VirSwine_enteric_coronavirus
nucleoprotein__YP_009199247__Swine_enteric_coronavirus__1766554
Identity
- Accession:
- YP_009199247 ↗
- Protein ID:
- nucleoprotein
- Kingdom:
- euk
Quality
68.8
mean pLDDT
Taxonomy
Orthornavirae›
Pisuviricota›
Pisoniviricetes›
Nidovirales›
Coronaviridae›
Alphacoronavirus›
Swine_enteric_coronavirus
TaxID: 1766554
Cluster
View cluster (30 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 39-151
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00937.24 best | CoV_nucleocap | 154.7 | 4.90e-45 | 100.0% | 33.4% |
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ek0A00 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.54 | 30.0 | 3.31e-01 | 77.0% | 66.7% |
| 1m0wA02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.53 | 34.0 | 3.52e-01 | 90.3% | 67.6% |
| 3ce8A00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 32.0 | 3.59e-01 | 100.0% | 78.7% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4857726 | 704.1.1.0 ↗ | beta complex topology › Coronavirus RNA-binding domain (N-terminal part of Pfam 00937) › Coronavirus RNA-binding domain (N-terminal part of Pfam 00937) › Coronavirus RNA-binding domain (N-terminal part of Pfam 00937) | 0.97 | 95.0 | 9.12e-01 | 100.0% | 91.1% |
| 2032219 | 704.1.1.1 ↗ | beta complex topology › Coronavirus RNA-binding domain (N-terminal part of Pfam 00937) › Coronavirus RNA-binding domain (N-terminal part of Pfam 00937) › Coronavirus RNA-binding domain (N-terminal part of Pfam 00937) › CoV_nucleocap | 0.97 | 92.0 | 8.70e-01 | 100.0% | 85.4% |
| 2306 | 704.1.1.1 ↗ | beta complex topology › Coronavirus RNA-binding domain (N-terminal part of Pfam 00937) › Coronavirus RNA-binding domain (N-terminal part of Pfam 00937) › Coronavirus RNA-binding domain (N-terminal part of Pfam 00937) › CoV_nucleocap | 0.91 | 87.0 | 8.06e-01 | 100.0% | 84.8% |
| 2305 | 704.1.1.1 ↗ | beta complex topology › Coronavirus RNA-binding domain (N-terminal part of Pfam 00937) › Coronavirus RNA-binding domain (N-terminal part of Pfam 00937) › Coronavirus RNA-binding domain (N-terminal part of Pfam 00937) › CoV_nucleocap | 0.76 | 70.0 | 6.22e-01 | 100.0% | 75.9% |
| 5022735 | 304.51.1.0 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related | 0.57 | 29.0 | 3.09e-01 | 71.7% | 52.0% |
| 3576134 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 27.0 | 3.54e-01 | 71.7% | 98.0% |
| 3484264 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.50 | 33.0 | 3.74e-01 | 79.6% | 93.8% |
D2
high
residues 236-336
Domain cluster:
rep: nucleocapsid_protein__YP_005352875__Wigeon_coronavirus_HKU20__1159908__D197-280
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00937.24 best | CoV_nucleocap | 117.3 | 1.20e-33 | 100.0% | 29.1% |