nucleoprotein

Euk-Vir

Yogue_virus

nucleoprotein__YP_009246491__Yogue_virus__1712572

Identity

85.4 mean pLDDT

Orthornavirae› Negarnaviricota› Bunyaviricetes› Hareavirales› Nairoviridae› Orthonairovirus› Yogue_virus

TaxID: 1712572

View cluster (24 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 195-303

PDB

Domain cluster: rep: nucleoprotein__YP_009553334__Tunis_virus__1810944__D200-304

D2 medium residues 1-36_72-153

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02477.21 best	Nairo_nucleo	83.3	2.40e-23	79.7%	17.2%

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2w31A00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.59	41.0	3.83e-01	72.0%	84.2%
1kyoF00	1.10.287.20	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Ubiquinol-cytochrome C reductase hinge domain	0.58	35.0	4.24e-01	89.8%	94.6%
3rx6A00	1.20.58.1090	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phage polarity suppression protein monomer	0.52	42.0	3.69e-01	90.7%	81.8%
1k90B03	1.20.140.60	Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 ›	0.51	32.0	3.32e-01	96.6%	66.1%

ECOD (6)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1723600	3574.1.1.1 ↗	alpha complex topology › Nucleocapsid protein › Nucleocapsid protein › Nucleocapsid protein › Nairo_nucleo	0.97	94.0	5.94e-01	100.0%	31.9%
1681656	3574.1.1.1 ↗	alpha complex topology › Nucleocapsid protein › Nucleocapsid protein › Nucleocapsid protein › Nairo_nucleo	0.93	90.0	7.59e-01	100.0%	85.5%
4196088	150.1.1.175 ↗	alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › BREX_BrxC_helical	0.57	32.0	3.39e-01	89.8%	60.0%
5012157	605.1.1.354 ↗	alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › MS_channel_1st_1	0.56	31.0	3.59e-01	79.7%	74.1%
3686033	149.1.1.1 ↗	alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450	0.54	44.0	3.22e-01	88.1%	59.1%
5021492	608.1.1.1 ↗	alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD	0.53	28.0	2.93e-01	92.4%	54.3%

D3 medium residues 154-184_419-498

PDB

Domain cluster: rep: nucleocapside__YP_009111286__Leopards_Hill_virus__1381104__D44-75_156-179_418-493

D4 medium residues 316-418

PDB

Domain cluster: rep: nucleocapsid_protein,_partial__YP_009666114__Chim_orthonairovirus__2170062__D314-412

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02477.21 best	Nairo_nucleo	112.3	3.80e-32	100.0%	23.2%