nucleoprotein

Euk-Vir

Canary_bornavirus_1

nucleoprotein__YP_009268905__Canary_bornavirus_1__1715288

Identity

70.6 mean pLDDT

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Bornaviridae› Orthobornavirus› Canary_bornavirus_1

TaxID: 1715288

View cluster (23 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 53-230

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF06407.16 best	BDV_P40	266.8	3.60e-79	100.0%	49.9%

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1n93X01	1.10.3040.10	Mainly Alpha › Orthogonal Bundle › borna disease virus nucleoprotein, domain 1 › borna disease virus nucleoprotein, domain 1	0.89	86.0	8.05e-01	100.0%	85.6%
4p9fA02	1.20.120.530	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like	0.52	32.0	3.52e-01	87.6%	75.0%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4845	566.1.1.5 ↗	alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related › BDV_P40	0.89	86.0	6.72e-01	100.0%	53.1%
1763953	566.1.1.3 ↗	alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related › Pneumo_ncap	0.60	55.0	4.33e-01	100.0%	53.9%
1815422	566.1.1.3 ↗	alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related › Pneumo_ncap	0.58	53.0	4.94e-01	100.0%	95.5%
3234622	109.4.1.649 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF4807	0.53	31.0	3.78e-01	77.0%	90.9%

D2 high residues 236-287_289-364

PDB

Domain cluster: rep: N__YP_009508485__Southwest_carpet_python_virus__2016402__D213-328

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF06407.16 best	BDV_P40	178.7	2.20e-52	100.0%	36.7%