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nucleoprotein
Euk-VirBorna_disease_virus_2
nucleoprotein__YP_009268917__Borna_disease_virus_2__1714622
Identity
- Accession:
- YP_009268917 ↗
- Protein ID:
- nucleoprotein
- Kingdom:
- euk
Quality
71.2
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Monjiviricetes›
Mononegavirales›
Bornaviridae›
Orthobornavirus›
Borna_disease_virus_2
TaxID: 1714622
Cluster
View cluster (23 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 235-363
Domain cluster:
rep: N__YP_009508485__Southwest_carpet_python_virus__2016402__D213-328
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF06407.16 best | BDV_P40 | 212.3 | 1.40e-62 | 100.0% | 36.7% |
D2
medium
residues 45-128
D3
medium
residues 129-232
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF06407.16 best | BDV_P40 | 193.5 | 7.30e-57 | 100.0% | 29.5% |
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1n93X01 | 1.10.3040.10 | Mainly Alpha › Orthogonal Bundle › borna disease virus nucleoprotein, domain 1 › borna disease virus nucleoprotein, domain 1 | 0.93 | 90.0 | 6.88e-01 | 100.0% | 50.0% |
| 3o4zA02 | 1.25.40.720 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tel2 C-terminal domain | 0.62 | 35.0 | 2.88e-01 | 100.0% | 29.9% |
| 4im7A02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.61 | 53.0 | 4.29e-01 | 97.1% | 90.4% |
| 5ermB00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.59 | 42.0 | 3.09e-01 | 76.0% | 78.0% |
| 1oj6A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.54 | 42.0 | 3.77e-01 | 82.7% | 83.0% |
| 3k3uA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.54 | 42.0 | 3.90e-01 | 84.6% | 86.1% |
| 1to9A00 | 1.20.910.10 | Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like | 0.54 | 46.0 | 3.72e-01 | 99.0% | 60.9% |
| 2f2gA00 | 1.20.910.10 | Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like | 0.54 | 45.0 | 3.64e-01 | 94.2% | 64.7% |
| 1xrsA00 | 3.20.20.440 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › D-Lysine 5,6-aminomutase alpha subunit | 0.54 | 38.0 | 2.48e-01 | 81.7% | 14.9% |
| 6fucA02 | 3.90.1200.10 | Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe | 0.53 | 39.0 | 3.32e-01 | 79.8% | 78.3% |
| 1gveB00 | 3.20.20.100 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain | 0.52 | 35.0 | 2.58e-01 | 97.1% | 23.9% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4845 | 566.1.1.5 ↗ | alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related › BDV_P40 | 0.93 | 90.0 | 6.02e-01 | 100.0% | 31.0% |
| 2476746 | 566.1.1.4 ↗ | alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related › Ebola_NP | 0.64 | 55.0 | 3.81e-01 | 99.0% | 26.4% |
| 4596846 | 129.1.1.9 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › NAD_Gly3P_dh_C | 0.63 | 56.0 | 4.94e-01 | 100.0% | 96.2% |
| 3864182 | 3736.1.1.0 ↗ | alpha superhelices › NLRC4 helical domain HD2 › NLRC4 helical domain HD2 › NLRC4 helical domain HD2 | 0.63 | 41.0 | 4.38e-01 | 98.1% | 76.7% |
| 1815422 | 566.1.1.3 ↗ | alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related › Pneumo_ncap | 0.62 | 54.0 | 4.32e-01 | 100.0% | 91.9% |
| 3198347 | 149.1.1.0 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 | 0.57 | 40.0 | 2.92e-01 | 75.0% | 57.4% |
| 4950341 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.56 | 45.0 | 3.85e-01 | 88.5% | 94.3% |
| 4008038 | 5050.1.1.20 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_4 | 0.54 | 45.0 | 3.69e-01 | 89.4% | 90.0% |
| 3772719 | 5050.1.1.10 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_2 | 0.54 | 43.0 | 3.26e-01 | 86.5% | 74.7% |
| 3692941 | 601.14.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Hemerythrin › Hemerythrin › Hemerythrin | 0.54 | 38.0 | 3.24e-01 | 75.0% | 90.3% |
| 4390324 | 5059.1.1.2 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › Multi_Drug_Res | 0.54 | 38.0 | 3.85e-01 | 72.1% | 75.0% |
| 3986007 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.54 | 44.0 | 3.64e-01 | 89.4% | 89.6% |
| 3181183 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.54 | 43.0 | 3.48e-01 | 89.4% | 87.7% |
| 4994872 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.54 | 44.0 | 3.64e-01 | 88.5% | 93.0% |
| 4989921 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.53 | 43.0 | 3.58e-01 | 88.5% | 90.8% |
| 3971899 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.52 | 42.0 | 3.43e-01 | 89.4% | 92.1% |
| 4110764 | 5050.1.1.10 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_2 | 0.52 | 43.0 | 3.19e-01 | 89.4% | 79.6% |
| 5022906 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.51 | 42.0 | 3.56e-01 | 89.4% | 93.1% |
| 3429331 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.51 | 40.0 | 3.31e-01 | 88.5% | 90.5% |