nucleoprotein

Euk-Vir

Kigluaik_phantom_orthophasmavirus

nucleoprotein__YP_009362030__Kigluaik_phantom_orthophasmavirus__1980539

Identity

71.0 mean pLDDT

Orthornavirae› Negarnaviricota› Bunyaviricetes› Elliovirales› Phasmaviridae› Orthophasmavirus› Orthophasmavirus_kigluaikense

TaxID: 1980539

View cluster (16 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 71-148_164-224

PDB

Domain cluster: rep: nucleocapsid_protein__YP_009553312__Yongsan_bunyavirus_1__2315803__D65-226

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2doaA00	1.10.10.2670	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › E3 ubiquitin-protein ligase	0.63	37.0	4.16e-01	100.0%	76.0%
7ec0P01	3.40.50.150	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39	0.56	39.0	3.53e-01	71.9%	99.5%
3fx3B02	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.53	34.0	3.90e-01	91.4%	91.6%
5jgjA01	3.40.50.150	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39	0.50	35.0	3.01e-01	71.9%	99.1%

ECOD (7)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3167098	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.74	33.0	4.91e-01	74.8%	98.3%
1266025	101.1.2.142 ↗	alpha arrays › HTH › HTH › winged helix domain › HTH_Crp_2	0.57	35.0	4.23e-01	92.1%	98.8%
3247860	2003.1.5.81 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25	0.57	44.0	3.49e-01	82.0%	98.6%
3515383	101.1.15.1 ↗	alpha arrays › HTH › HTH › HAT1, C-terminal domain › MOZ_SAS	0.56	36.0	4.07e-01	100.0%	89.0%
4558041	2003.1.5.67 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_12	0.54	38.0	3.13e-01	71.9%	98.0%
4024117	101.1.2.366 ↗	alpha arrays › HTH › HTH › winged helix domain › DUF3161	0.53	29.0	3.41e-01	77.0%	77.8%
3972089	2003.1.5.81 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25	0.51	39.0	3.23e-01	81.3%	98.8%

D2 high residues 241-373

PDB

Domain cluster: rep: nucleocapsid__YP_009664552__Ferak_virus__1664810__D164-285