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nucleoprotein
Euk-VirSripur_virus
nucleoprotein__YP_009362210__Sripur_virus__1620897
Identity
- Accession:
- YP_009362210 ↗
- Protein ID:
- nucleoprotein
- Kingdom:
- euk
Quality
84.9
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Monjiviricetes›
Mononegavirales›
Rhabdoviridae›
Sripuvirus›
Sripur_virus
TaxID: 1620897
Cluster
View cluster (144 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 35-221
Domain cluster:
rep: nucleocapsid_protein__YP_008686596__Drosophila_obscura_sigmavirus_10A__666962__D36-146_214-247
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00945.24 best | Rhabdo_ncap | 80.5 | 1.80e-22 | 100.0% | 44.4% |
D2
high
residues 230-347_371-423
Domain cluster:
rep: nucleoprotein__YP_009094365__Almpiwar_virus__318843__D225-426
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00945.24 best | Rhabdo_ncap | 83.1 | 2.70e-23 | 74.3% | 28.3% |
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2gicD02 | 1.10.3610.10 | Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like › Nucleoprotein | 0.96 | 93.0 | 8.81e-01 | 100.0% | 96.9% |
| 2gttJ02 | 1.10.3610.10 | Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like › Nucleoprotein | 0.88 | 85.0 | 8.14e-01 | 100.0% | 97.4% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2992377 | 566.2.1.1 ↗ | alpha complex topology › P40 nucleoprotein-like › Rhabdovirus nucleocapsid protein › Rhabdovirus nucleocapsid protein › Rhabdo_ncap | 0.95 | 65.0 | 4.86e-01 | 73.1% | 32.2% |
| 2966640 | 566.2.1.1 ↗ | alpha complex topology › P40 nucleoprotein-like › Rhabdovirus nucleocapsid protein › Rhabdovirus nucleocapsid protein › Rhabdo_ncap | 0.93 | 91.0 | 6.59e-01 | 100.0% | 44.2% |
| 2749214 | 566.1.1.1 ↗ | alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related › Paramyxo_ncap | 0.72 | 48.0 | 3.63e-01 | 74.9% | 29.6% |
| 1763953 | 566.1.1.3 ↗ | alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related › Pneumo_ncap | 0.67 | 44.0 | 3.39e-01 | 73.1% | 29.8% |
| 2476746 | 566.1.1.4 ↗ | alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related › Ebola_NP | 0.59 | 51.0 | 3.95e-01 | 95.9% | 41.7% |
| 4348932 | 5069.1.3.1 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › Sdh_cyt | 0.58 | 31.0 | 3.64e-01 | 82.5% | 71.7% |
| 4263266 | 109.4.1.356 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans | 0.50 | 45.0 | 3.21e-01 | 100.0% | 82.0% |