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nucleoprotein
Euk-VirIriri_virus
nucleoprotein__YP_009362229__Iriri_virus__1620893
Identity
- Accession:
- YP_009362229 ↗
- Protein ID:
- nucleoprotein
- Kingdom:
- euk
Quality
87.2
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Monjiviricetes›
Mononegavirales›
Rhabdoviridae›
Curiovirus›
Iriri_virus
TaxID: 1620893
Cluster
View cluster (144 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 35-217
Domain cluster:
rep: nucleocapsid_protein__YP_008686596__Drosophila_obscura_sigmavirus_10A__666962__D36-146_214-247
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00945.24 best | Rhabdo_ncap | 165.4 | 2.90e-48 | 100.0% | 42.9% |
D2
medium
residues 219-353
Domain cluster:
rep: nucleocapsid_protein__YP_009551688__Merida-like_virus_KE-2017a__1969830__D268-379
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00945.24 best | Rhabdo_ncap | 153.5 | 1.10e-44 | 99.3% | 31.7% |
D3
medium
residues 369-423
Domain cluster:
rep: nucleoprotein__YP_009362111__Marco_virus__1158190__D382-436
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3j27A05 | 1.20.1280.260 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.57 | 37.0 | 3.07e-01 | 78.2% | 36.0% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3691784 | 611.3.1.6 ↗ | alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › BLM10_N | 0.57 | 38.0 | 3.26e-01 | 70.9% | 65.3% |
| 2323818 | 1191.1.1.1 ↗ | alpha duplicates or obligate multimers › UPF0253 protein YaeP › UPF0253 protein YaeP › UPF0253 protein YaeP › UPF0253 | 0.56 | 39.0 | 3.67e-01 | 96.4% | 60.0% |
| 3658113 | 857.1.1.16 ↗ | a+b duplicates or obligate multimers › Cell division protein ZapA-like › Cell division protein ZapA-like › Cell division protein ZapA-like › DUF1677 | 0.52 | 38.0 | 3.50e-01 | 76.4% | 67.1% |
| 3388213 | 235.1.1.10 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Glucosaminidase | 0.51 | 35.0 | 2.51e-01 | 76.4% | 38.6% |