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nucleoprotein
Euk-VirKlamath_virus
nucleoprotein__YP_009362259__Klamath_virus__909206
Identity
- Accession:
- YP_009362259 ↗
- Protein ID:
- nucleoprotein
- Kingdom:
- euk
Quality
91.6
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Monjiviricetes›
Mononegavirales›
Rhabdoviridae›
Tupavirus›
Klamath_virus
TaxID: 909206
Cluster
View cluster (144 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 37-224
Domain cluster:
rep: nucleocapsid_protein__YP_008686596__Drosophila_obscura_sigmavirus_10A__666962__D36-146_214-247
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00945.24 best | Rhabdo_ncap | 150.4 | 1.00e-43 | 100.0% | 44.6% |
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2gttC01 | 1.10.3570.10 | Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like fold › Rhabdovirus nucleocapsid protein like domain | 0.89 | 85.0 | 8.43e-01 | 98.9% | 100.0% |
| 3hhwK01 | 1.10.3570.10 | Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like fold › Rhabdovirus nucleocapsid protein like domain | 0.86 | 80.0 | 8.16e-01 | 98.4% | 100.0% |
| 1n93X01 | 1.10.3040.10 | Mainly Alpha › Orthogonal Bundle › borna disease virus nucleoprotein, domain 1 › borna disease virus nucleoprotein, domain 1 | 0.56 | 49.0 | 4.79e-01 | 96.3% | 90.9% |
| 1a41A02 | 1.20.120.380 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2 | 0.53 | 25.0 | 3.42e-01 | 78.7% | 88.3% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4846751 | 566.2.1.1 ↗ | alpha complex topology › P40 nucleoprotein-like › Rhabdovirus nucleocapsid protein › Rhabdovirus nucleocapsid protein › Rhabdo_ncap | 0.90 | 87.0 | 7.45e-01 | 100.0% | 71.0% |
| 2992377 | 566.2.1.1 ↗ | alpha complex topology › P40 nucleoprotein-like › Rhabdovirus nucleocapsid protein › Rhabdovirus nucleocapsid protein › Rhabdo_ncap | 0.90 | 87.0 | 6.68e-01 | 100.0% | 53.1% |
| 2966640 | 566.2.1.1 ↗ | alpha complex topology › P40 nucleoprotein-like › Rhabdovirus nucleocapsid protein › Rhabdovirus nucleocapsid protein › Rhabdo_ncap | 0.89 | 85.0 | 6.42e-01 | 100.0% | 47.2% |
| 4096159 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.63 | 27.0 | 3.95e-01 | 73.4% | 88.2% |
| 1763953 | 566.1.1.3 ↗ | alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related › Pneumo_ncap | 0.63 | 57.0 | 4.61e-01 | 100.0% | 72.9% |
| 3957449 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.62 | 27.0 | 3.63e-01 | 70.7% | 76.0% |
| 4429233 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.61 | 27.0 | 3.89e-01 | 71.3% | 89.4% |
| 4588041 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.61 | 27.0 | 3.95e-01 | 71.3% | 90.0% |
| 3645683 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.60 | 31.0 | 2.51e-01 | 94.7% | 26.2% |
| 3435936 | 109.4.1.18 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPTA | 0.56 | 34.0 | 2.98e-01 | 95.7% | 41.1% |
| 4323909 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.55 | 25.0 | 3.49e-01 | 71.3% | 84.2% |
| 3178762 | 109.4.1.356 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans | 0.54 | 30.0 | 2.99e-01 | 91.0% | 48.8% |
| 3392986 | 632.1.1.19 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › RH_dom | 0.53 | 28.0 | 3.81e-01 | 89.9% | 98.0% |
D2
high
residues 230-347_375-429
Domain cluster:
rep: nucleoprotein__YP_009094365__Almpiwar_virus__318843__D225-426
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00945.24 best | Rhabdo_ncap | 98.9 | 4.50e-28 | 68.2% | 27.8% |