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nucleoprotein

Euk-Vir

Rice_hoja_blanca_tenuivirus

nucleoprotein__YP_009449448__Rice_hoja_blanca_tenuivirus__12332

Identity

Accession:: YP_009449448 ↗
Protein ID:: nucleoprotein
Kingdom:: euk

Quality

76.5 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Bunyaviricetes› Hareavirales› Phenuiviridae› Tenuivirus› Tenuivirus_oryzalbae

TaxID: 12332

Cluster

View cluster (83 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 41-139

PDB

Domain cluster: rep: putative_nucleoprotein__YP_009330282__Hubei_diptera_virus_5__1922886__D214-314

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05733.17 best	Tenui_N	128.7	3.60e-37	100.0%	42.4%

CATH (13)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2oebA00	1.10.520.30	Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › AF1862-like domain	0.60	49.0	4.28e-01	88.9%	94.1%
4xzjA01	3.90.176.10	Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1	0.57	47.0	3.71e-01	89.9%	71.6%
5z4zC00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.55	39.0	4.15e-01	75.8%	92.0%
3bj6B00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.55	41.0	3.59e-01	79.8%	72.8%
5eriA00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.55	41.0	3.63e-01	81.8%	73.9%
4em2A00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.54	40.0	3.57e-01	80.8%	70.0%
4g84A01	3.30.930.10	Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2	0.53	42.0	2.99e-01	88.9%	36.3%
2rdpA00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.53	40.0	3.60e-01	81.8%	78.6%
3s2wG00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.52	43.0	3.93e-01	92.9%	78.9%
4ar9A02	1.10.390.20	Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 ›	0.51	37.0	3.31e-01	75.8%	74.6%
6ziwI02	1.10.510.10	Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1	0.50	36.0	2.97e-01	73.7%	46.7%
4z7xB00	3.40.30.10	Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin	0.50	38.0	3.05e-01	81.8%	73.6%
1svmA01	1.10.10.510	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Zinc finger, large T-antigen D1 domain	0.50	39.0	4.11e-01	85.9%	95.6%

ECOD (14)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1030601	3143.1.2.1 ↗	alpha complex topology › Rift Valley fever virus nucleocapsid protein-related › Rift Valley fever virus nucleocapsid protein-related › Rift Valley fever virus nucleocapsid protein › Tenui_N	0.89	83.0	5.95e-01	100.0%	38.6%
1007268	3143.1.2.1 ↗	alpha complex topology › Rift Valley fever virus nucleocapsid protein-related › Rift Valley fever virus nucleocapsid protein-related › Rift Valley fever virus nucleocapsid protein › Tenui_N	0.89	80.0	5.78e-01	100.0%	37.9%
3283604	101.1.3.4 ↗	alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30	0.64	51.0	5.09e-01	87.9%	83.0%
3289370	101.1.1.300 ↗	alpha arrays › HTH › HTH › Three-helical HTH › HTH_30	0.64	50.0	5.07e-01	87.9%	83.0%
4965723	182.1.3.3 ↗	alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › PriX › DNA_primase_lrg	0.62	40.0	3.84e-01	76.8%	55.0%
3944389	101.1.3.4 ↗	alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30	0.61	49.0	5.17e-01	88.9%	100.0%
3282047	101.1.3.4 ↗	alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30	0.60	47.0	4.78e-01	85.9%	84.0%
3280686	101.1.3.4 ↗	alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30	0.59	47.0	4.76e-01	87.9%	91.0%
4943504	101.1.2.877 ↗	alpha arrays › HTH › HTH › winged helix domain › BpsA_C	0.56	46.0	4.79e-01	92.9%	98.9%
2168246	1176.1.1.1 ↗	alpha arrays › Nitrogenase vanadium-iron protein delta chain › Nitrogenase vanadium-iron protein delta chain › Nitrogenase vanadium-iron protein delta chain › AnfG_VnfG	0.56	46.0	4.44e-01	90.9%	88.5%
4992977	101.1.2.135 ↗	alpha arrays › HTH › HTH › winged helix domain › MarR_2	0.54	43.0	4.10e-01	87.9%	80.8%
4570968	314.1.1.9 ↗	a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_His	0.52	44.0	3.00e-01	92.9%	36.6%
4997271	1188.1.1.1 ↗	alpha bundles › ZIP zinc transporter › ZIP zinc transporter › ZIP zinc transporter › Zip	0.51	40.0	3.08e-01	86.9%	90.4%
None	—		0.50	40.0	2.85e-01	89.9%	33.1%

D2 medium residues 140-315

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05733.17 best	Tenui_N	100.1	2.10e-28	63.6%	43.8%

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3aqtA00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.50	35.0	3.43e-01	70.5%	81.5%