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nucleoprotein

Euk-Vir

Bat_Paramyxovirus_Epo_spe_AR1_DRC_2009

nucleoprotein__YP_009505442__Bat_Paramyxovirus_Epo_spe_AR1_DRC_2009__1112597

Identity

Accession:
YP_009505442 ↗
Protein ID:
nucleoprotein
Kingdom:
euk

Quality

71.7 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Paramyxoviridae› Orthorubulavirus› Bat_Paramyxovirus_Epo_spe/AR1/DRC/2009

TaxID: 1112597

Cluster

View cluster (62 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 266-402
PDB
Domain cluster: rep: nucleocapsid_protein__NP_054707__Mumps_orthorubulavirus__2560602__D281-403
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00973.26 best Paramyxo_ncap 202.9 1.20e-59 100.0% 33.8%
D2 medium residues 31-148
PDB
Domain cluster: rep: nucleocapsid_protein__YP_009177597__Phocine_morbillivirus__11240__D32-140
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00973.26 best Paramyxo_ncap 84.0 1.50e-23 100.0% 29.0%
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1usgA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.57 45.0 3.81e-01 84.7% 92.0%
1aoxA00 3.40.50.410 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain 0.56 46.0 3.93e-01 89.8% 95.0%
3b0xA01 1.10.150.110 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DNA polymerase beta, N-terminal domain-like 0.56 40.0 4.57e-01 78.8% 100.0%
3gxbA00 3.40.50.410 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain 0.56 45.0 3.98e-01 87.3% 96.6%
7xlqD02 3.40.50.410 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain 0.55 45.0 3.88e-01 88.1% 91.6%
4btfA01 1.20.930.20 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Adaptor protein Cbl, N-terminal domain 0.55 36.0 3.86e-01 78.0% 77.0%
3lcnB00 1.10.340.40 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain 0.54 39.0 4.24e-01 76.3% 94.8%
1ezwA00 3.20.20.30 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain 0.53 43.0 3.13e-01 89.0% 98.3%
4rv5A01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.53 45.0 3.82e-01 96.6% 67.5%
1tjyA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.53 43.0 3.87e-01 88.1% 83.4%
4rsmD01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.53 43.0 3.91e-01 89.0% 88.3%
4mptA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.53 46.0 3.77e-01 98.3% 67.8%
4kv7A01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.52 45.0 3.83e-01 98.3% 68.4%
5ujwD00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.52 42.0 3.27e-01 85.6% 97.2%
3oy2A02 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.52 42.0 3.42e-01 88.1% 73.3%
4n03A01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.52 46.0 3.84e-01 100.0% 67.1%
3lk7A02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.52 45.0 3.80e-01 98.3% 95.6%
3c48B02 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.52 42.0 3.67e-01 89.0% 76.5%
3hutA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.51 44.0 3.79e-01 97.5% 67.9%
5dxfA02 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.51 42.0 3.51e-01 89.8% 76.8%
4eadA02 3.40.1030.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyrimidine Nucleoside Phosphorylase; Chain A, domain 2 › Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 0.51 45.0 3.68e-01 100.0% 95.2%
5hyhA00 1.10.620.20 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A 0.51 42.0 3.18e-01 89.8% 73.2%
6h0cA02 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.50 41.0 3.84e-01 90.7% 88.8%
1us5A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.50 44.0 4.03e-01 97.5% 77.8%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2996711 566.1.1.1 ↗ alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related › Paramyxo_ncap 0.97 94.0 6.18e-01 100.0% 29.3%
2521251 566.1.1.1 ↗ alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related › Paramyxo_ncap 0.93 87.0 5.81e-01 100.0% 29.7%
2769765 566.1.1.1 ↗ alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related › Paramyxo_ncap 0.88 82.0 5.51e-01 100.0% 29.4%
2749214 566.1.1.1 ↗ alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related › Paramyxo_ncap 0.81 75.0 5.08e-01 100.0% 30.1%
2756727 566.1.1.1 ↗ alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related › Paramyxo_ncap 0.80 75.0 5.10e-01 100.0% 29.9%
3573542 566.1.1.0 ↗ alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related 0.75 55.0 3.92e-01 100.0% 27.0%
3507992 566.1.1.0 ↗ alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related 0.66 60.0 4.33e-01 99.2% 45.8%
4942190 633.12.1.1 ↗ alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like › UPF0147 0.60 36.0 4.19e-01 76.3% 80.7%
4153160 2007.1.14.3 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › Ferrochelatase 0.58 45.0 3.96e-01 82.2% 94.1%
3747216 2006.1.6.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA 0.56 44.0 3.81e-01 86.4% 90.3%
3229087 2007.1.2.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.53 47.0 3.65e-01 100.0% 55.9%
3607483 2004.1.1.24 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom,Helicase_C 0.52 42.0 2.65e-01 89.0% 46.8%
3843220 150.3.1.1 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › 4-helical cytokines › 4-helical cytokine › Hormone_1 0.52 37.0 3.03e-01 73.7% 74.8%
3630848 2002.1.1.90 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MTHFR 0.51 42.0 3.02e-01 89.8% 88.3%
D3 medium residues 149-265
PDB
Domain cluster: rep: nucleocapsid_protein__YP_009512957__Feline_morbillivirus__1170234__D152-264
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00973.26 best Paramyxo_ncap 133.4 1.50e-38 100.0% 28.7%