nucleoprotein

Euk-Vir

Piry_virus

nucleoprotein__YP_009505532__Piry_virus__11274

Identity

91.1 mean pLDDT

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Rhabdoviridae› Vesiculovirus› Piry_virus

TaxID: 11274

View cluster (144 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 29-221

PDB

Domain cluster: rep: nucleocapsid_protein__YP_008686596__Drosophila_obscura_sigmavirus_10A__666962__D36-146_214-247

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00945.24 best	Rhabdo_ncap	176.7	1.10e-51	100.0%	46.8%

D2 medium residues 247-323

PDB

Domain cluster: rep: nucleocapsid_protein__YP_009094263__Grass_carp_virus__1288359__D228-303

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00945.24 best	Rhabdo_ncap	120.7	1.10e-34	100.0%	18.8%

D3 medium residues 324-343_375-427

PDB

Domain cluster: rep: nucleoprotein__YP_009505537__Vesiculovirus_radi__1972566__D376-428

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2gicD02	1.10.3610.10	Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like › Nucleoprotein	0.98	94.0	6.58e-01	100.0%	48.2%
2gttJ02	1.10.3610.10	Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like › Nucleoprotein	0.79	70.0	5.15e-01	100.0%	46.8%
4wv4B00	1.10.20.10	Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A	0.60	40.0	3.75e-01	79.5%	53.8%

ECOD (8)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2966640	566.2.1.1 ↗	alpha complex topology › P40 nucleoprotein-like › Rhabdovirus nucleocapsid protein › Rhabdovirus nucleocapsid protein › Rhabdo_ncap	0.98	94.0	5.65e-01	100.0%	20.5%
4304666	532.1.1.0 ↗	alpha arrays › Type III secretion system domain-like › Antibiotic binding domain of TipA-like multidrug resistance regulators › Antibiotic binding domain of TipA-like multidrug resistance regulators	0.62	42.0	3.86e-01	100.0%	52.0%
3217232	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.55	37.0	3.62e-01	83.6%	61.2%
4927051	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.54	35.0	3.59e-01	98.6%	68.6%
3582578	108.1.1.0 ↗	alpha arrays › EF-hand › EF-hand-related › EF-hand	0.53	34.0	3.17e-01	79.5%	48.4%
5050672	3783.1.1.0 ↗	alpha bundles › Toxin RnlA C-terminal domain › Toxin RnlA C-terminal domain › Toxin RnlA C-terminal domain	0.53	37.0	2.86e-01	74.0%	89.7%
4175971	604.3.1.43 ↗	alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › FliX	0.52	37.0	3.46e-01	91.8%	60.0%
4926955	6049.1.1.0 ↗	alpha bundles › PH0832-like › PH0832-like › PH0832-like	0.52	43.0	4.02e-01	100.0%	95.0%