nucleoprotein

Euk-Vir

Vesiculovirus_radi

nucleoprotein__YP_009505537__Vesiculovirus_radi__1972566

Identity

83.0 mean pLDDT

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Rhabdoviridae› Vesiculovirus› Vesiculovirus_radi

TaxID: 1972566

View cluster (144 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 41-221

PDB

Domain cluster: rep: nucleocapsid_protein__YP_008686596__Drosophila_obscura_sigmavirus_10A__666962__D36-146_214-247

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00945.24 best	Rhabdo_ncap	192.2	2.10e-56	100.0%	42.7%

D2 medium residues 225-342

PDB

Domain cluster: rep: nucleocapsid__YP_009302014__Wuhan_Louse_Fly_Virus_10__1608114__D226-319_345-374

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00945.24 best	Rhabdo_ncap	159.8	1.40e-46	100.0%	28.3%

D3 medium residues 376-428

PDB

Domain cluster: representative

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2gicD02	1.10.3610.10	Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like › Nucleoprotein	0.98	93.0	6.00e-01	100.0%	27.2%
2gttJ02	1.10.3610.10	Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like › Nucleoprotein	0.79	68.0	4.64e-01	98.1%	39.5%
3j27A05	1.20.1280.260	Mainly Alpha › Up-down Bundle › Monooxygenase ›	0.59	38.0	3.17e-01	75.5%	35.0%
4hhyC01	1.20.142.10	Mainly Alpha › Up-down Bundle › Poly(ADP-ribose) Polymerase; domain 1 › Poly(ADP-ribose) polymerase, regulatory domain	0.54	38.0	2.88e-01	75.5%	47.3%
2oxlA00	1.20.5.5260	Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces ›	0.52	35.0	3.42e-01	94.3%	59.7%
2rkhA02	1.20.1280.20	Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain	0.51	40.0	3.63e-01	92.5%	86.8%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2966640	566.2.1.1 ↗	alpha complex topology › P40 nucleoprotein-like › Rhabdovirus nucleocapsid protein › Rhabdovirus nucleocapsid protein › Rhabdo_ncap	0.97	92.0	5.30e-01	100.0%	13.2%
3803972	130.1.1.0 ↗	alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif	0.60	41.0	3.83e-01	98.1%	55.7%
4175971	604.3.1.43 ↗	alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › FliX	0.60	43.0	3.61e-01	75.5%	52.2%
3221438	109.4.1.1414 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_TTI1_C	0.55	44.0	2.87e-01	96.2%	38.6%