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nucleoprotein
Euk-VirAvian_paramyxovirus_UPO216
nucleoprotein__YP_009508499__Avian_paramyxovirus_UPO216__2006690
Identity
- Accession:
- YP_009508499 ↗
- Protein ID:
- nucleoprotein
- Kingdom:
- euk
Quality
74.5
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Monjiviricetes›
Mononegavirales›
Paramyxoviridae›
Orthoavulavirus›
avian_paramyxovirus_16
TaxID: 2006690
Cluster
View cluster (62 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 32-157
Domain cluster:
rep: nucleocapsid_protein__YP_009177597__Phocine_morbillivirus__11240__D32-140
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00973.26 best | Paramyxo_ncap | 89.4 | 3.50e-25 | 100.0% | 31.0% |
D2
medium
residues 340-398
Domain cluster:
rep: N_protein__YP_010085016__Pohorje_myodes_paramyxovirus_1__2116604__D362-418
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00973.26 best | Paramyxo_ncap | 45.8 | 6.00e-12 | 100.0% | 14.2% |
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2cwqA00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.69 | 53.0 | 4.12e-01 | 83.1% | 41.3% |
| 5svlA01 | 1.10.287.940 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › atp-gated p2x4 ion channel | 0.62 | 43.0 | 4.20e-01 | 74.6% | 67.6% |
| 1yy7A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.61 | 43.0 | 3.56e-01 | 74.6% | 44.8% |
| 5w6lA01 | 3.40.50.11550 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.57 | 39.0 | 2.70e-01 | 100.0% | 18.9% |
| 1j30A00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.56 | 40.0 | 3.08e-01 | 76.3% | 31.9% |
| 1x4tA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.56 | 38.0 | 3.91e-01 | 72.9% | 81.0% |
| 2x4hA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 47.0 | 3.75e-01 | 100.0% | 97.7% |
| 2rp4A00 | 6.10.280.60 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Transcription factor p53, C-terminal domain | 0.54 | 39.0 | 3.73e-01 | 94.9% | 66.2% |
| 3vm9A02 | 6.10.140.2110 | Special › Helix non-globular › Helix Hairpins › | 0.53 | 41.0 | 4.22e-01 | 96.6% | 87.7% |
| 5jbdA03 | 3.20.20.470 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glucansucrase | 0.52 | 43.0 | 2.70e-01 | 98.3% | 87.6% |
| 2hwjA02 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.52 | 31.0 | 3.10e-01 | 96.6% | 57.4% |
| 1q6aA00 | 1.10.1240.30 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › KaiA/RbsU domain | 0.50 | 41.0 | 3.55e-01 | 100.0% | 57.9% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3895470 | 3826.1.1.0 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) | 0.63 | 45.0 | 3.84e-01 | 74.6% | 48.4% |
| 4659432 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.61 | 43.0 | 4.03e-01 | 96.6% | 58.7% |
| 3691871 | 103.1.1.105 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › 2TM_P5A-ATPase | 0.61 | 42.0 | 4.07e-01 | 74.6% | 77.1% |
| 3180930 | 3652.1.1.7 ↗ | alpha duplicates or obligate multimers › Qua1 › Qua1 › Qua1 › 2TM_P5A-ATPase | 0.61 | 42.0 | 4.07e-01 | 74.6% | 77.1% |
| 3591320 | 5043.1.1.2 ↗ | extended segments › Sensor proteins transmembrane domains › Htr2 transmembrane domain-like › Htr2 transmembrane domain-like › SPC12 | 0.58 | 39.0 | 3.81e-01 | 72.9% | 62.9% |
| 5055477 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.56 | 42.0 | 3.86e-01 | 83.1% | 73.8% |
| 4933264 | 5060.1.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › V-type ATP synthase subunit C › V-type ATP synthase subunit C › vATP-synt_AC39 | 0.55 | 44.0 | 3.53e-01 | 89.8% | 48.3% |
| 3719414 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.54 | 40.0 | 3.94e-01 | 98.3% | 74.3% |
| 3459313 | 616.1.1.1 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › Ribosomal_S15 | 0.54 | 40.0 | 3.53e-01 | 89.8% | 53.3% |
| 3638091 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.53 | 39.0 | 2.51e-01 | 81.4% | 74.8% |
| 4536670 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.53 | 37.0 | 3.02e-01 | 78.0% | 38.5% |
| 3693961 | 148.1.1.12 ↗ | alpha arrays › Histone-like › Histone-related › Histone › Bromo_TP | 0.51 | 37.0 | 3.48e-01 | 78.0% | 62.7% |