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nucleoprotein

Euk-Vir

Wenling_frogfish_arenavirus_1

nucleoprotein__YP_009551554__Wenling_frogfish_arenavirus_1__2116466

Identity

Accession:
YP_009551554 ↗
Protein ID:
nucleoprotein
Kingdom:
euk

Quality

67.3 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Bunyaviricetes› Hareavirales› Arenaviridae› Antennavirus› Wenling_frogfish_arenavirus_1

TaxID: 2116466

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 87-126_222-377
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3t5qG01 1.10.150.550 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Arenavirus nucleocapsid protein, head domain 0.89 39.0 5.49e-01 98.0% 81.7%
D2 medium residues 425-446_525-560
PDB
D3 medium residues 447-524
PDB
Domain cluster: representative
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1e3hA01 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.65 48.0 3.39e-01 79.5% 29.0%
2f96A00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.64 57.0 4.24e-01 100.0% 47.3%
4xa2A01 3.30.700.10 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › Glycoprotein, Type 4 Pilin 0.60 38.0 3.38e-01 84.6% 44.2%
4e0aA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.60 44.0 3.51e-01 76.9% 57.7%
1yvuA04 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.59 45.0 3.22e-01 100.0% 29.0%
3tw8A01 3.30.450.200 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin module 0.59 35.0 2.95e-01 98.7% 32.6%
1ut7B01 2.170.150.80 Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › NAC domain 0.58 34.0 2.92e-01 85.9% 36.8%
2fa1A00 3.40.1410.10 Alpha Beta › 3-Layer(aba) Sandwich › Chorismate lyase › Chorismate lyase-like 0.58 42.0 3.27e-01 75.6% 71.1%
3mgdB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.57 42.0 3.39e-01 78.2% 55.9%
1z4eA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.56 41.0 3.35e-01 76.9% 57.3%
2w3sB02 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.56 43.0 3.40e-01 83.3% 49.1%
1tiqB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.56 40.0 3.18e-01 76.9% 51.8%
2lrsA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 36.0 3.77e-01 100.0% 73.2%
1xkzC00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.55 37.0 2.65e-01 100.0% 21.8%
1dgjA04 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.55 43.0 3.47e-01 84.6% 51.9%
4hhvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 38.0 3.49e-01 100.0% 55.3%
5n1tA03 3.90.760.10 Alpha Beta › Alpha-Beta Complex › Flavocytochrome C Sulfide Dehydrogenase; Chain A Domain 3 › Flavocytochrome c sulphide dehydrogenase, flavin-binding domain 0.54 37.0 3.87e-01 89.7% 77.5%
1ffvB02 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.54 43.0 3.53e-01 85.9% 55.9%
3akoC00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.54 35.0 2.92e-01 73.1% 33.6%
4zohA02 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.54 43.0 3.61e-01 85.9% 62.4%
3lygA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 33.0 2.89e-01 76.9% 40.0%
2cm5A00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.54 47.0 3.86e-01 97.4% 66.4%
1w15A00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.54 47.0 3.95e-01 97.4% 74.2%
3d3lA02 3.10.450.60 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 38.0 3.84e-01 97.4% 73.8%
3jvnA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 39.0 3.41e-01 79.5% 63.9%
2ozgA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 38.0 3.04e-01 78.2% 45.1%
3njaA02 2.10.70.100 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.52 31.0 3.74e-01 83.3% 100.0%
4r8oA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.52 41.0 3.85e-01 85.9% 71.4%
4r03A00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.52 45.0 4.08e-01 98.7% 73.4%
3he1A00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.51 41.0 3.32e-01 85.9% 100.0%
2fl4A02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 38.0 3.48e-01 78.2% 76.0%
5ay6A01 2.60.98.20 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Flagellar hook protein FlgE 0.51 37.0 2.98e-01 78.2% 51.5%
3ua3A03 2.70.160.11 Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 0.51 35.0 2.75e-01 74.4% 93.6%
4c4aA04 2.70.160.11 Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 0.51 34.0 2.82e-01 70.5% 100.0%
4hn3A00 3.10.570.10 Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain 0.51 39.0 2.67e-01 87.2% 27.7%
1vmeB01 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.51 43.0 3.08e-01 97.4% 60.6%
2wsaA00 3.40.630.170 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › 0.50 41.0 2.66e-01 93.6% 84.7%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3689537 2484.1.1.90 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DEDDh_C 0.75 69.0 4.99e-01 100.0% 40.5%
4381276 2484.1.1.13 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.64 57.0 4.11e-01 100.0% 42.4%
4044396 2484.1.1.13 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.64 57.0 4.21e-01 100.0% 46.8%
3784398 2484.1.1.34 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.62 56.0 3.88e-01 100.0% 36.1%
3607863 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.61 38.0 3.57e-01 100.0% 50.5%
1860370 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.61 45.0 3.80e-01 78.2% 73.9%
5009779 2484.1.1.29 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ppx-GppA 0.60 48.0 4.13e-01 100.0% 54.4%
4975985 213.1.1.0 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.60 43.0 3.89e-01 76.9% 83.6%
3796820 245.1.1.0 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 0.60 42.0 4.15e-01 76.9% 68.2%
3742332 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.59 43.0 3.97e-01 75.6% 84.0%
3278646 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.57 42.0 3.40e-01 78.2% 58.1%
3940715 2484.5.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH 0.56 42.0 3.52e-01 100.0% 46.7%
5010552 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.56 43.0 3.69e-01 100.0% 50.8%
4252267 213.1.1.7 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › FemAB 0.55 41.0 3.13e-01 78.2% 49.4%
3505293 642.1.1.2 ↗ a+b three layers › Suppressor of Fused, N-terminal domain › Suppressor of Fused, N-terminal domain › Suppressor of Fused, N-terminal domain › SARA_C 0.55 36.0 2.74e-01 100.0% 27.4%
2663457 213.1.1.7 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › FemAB 0.55 41.0 3.29e-01 78.2% 57.5%
4105352 2484.1.1.199 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_mut 0.55 41.0 2.83e-01 79.5% 73.7%
3260045 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.55 36.0 3.70e-01 100.0% 69.3%
3898059 11.2.1.43 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2+FerI 0.55 43.0 2.80e-01 83.3% 63.8%
3989826 213.1.1.7 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › FemAB 0.54 40.0 3.24e-01 78.2% 66.0%
4031371 264.2.1.1 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain › Topoisom_bac 0.54 43.0 3.59e-01 100.0% 49.3%
3723969 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.54 39.0 3.11e-01 76.9% 43.8%
3390095 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.53 40.0 3.32e-01 83.3% 85.2%
3798461 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 35.0 3.10e-01 98.7% 43.3%
3580101 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.52 46.0 3.64e-01 100.0% 78.5%
3393645 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.52 37.0 2.83e-01 78.2% 95.8%
3528703 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.51 42.0 3.20e-01 96.2% 75.2%
4379266 316.1.1.1 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PolyA_pol 0.51 42.0 3.45e-01 100.0% 91.8%
3819047 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.50 37.0 3.18e-01 82.1% 96.4%
4971256 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.50 37.0 3.29e-01 97.4% 51.2%
3591928 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.50 42.0 2.68e-01 100.0% 19.2%
D4 medium residues 561-622
PDB