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nucleoprotein
Euk-VirAvalon_virus
nucleoprotein__YP_009551598__Avalon_virus__1810950
Identity
- Accession:
- YP_009551598 ↗
- Protein ID:
- nucleoprotein
- Kingdom:
- euk
Quality
82.6
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Bunyaviricetes›
Hareavirales›
Nairoviridae›
Orthonairovirus›
Avalon_virus
TaxID: 1810950
Cluster
View cluster (24 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 190-289
Domain cluster:
rep: nucleoprotein__YP_009553334__Tunis_virus__1810944__D200-304
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02477.21 best | Nairo_nucleo | 40.0 | 3.40e-10 | 100.0% | 21.0% |
D2
medium
residues 11-151_300-323_388-417
Domain cluster:
rep: nucleoprotein__YP_010229112__Clo_Mor_virus__1810952__D1-77_374-435
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02477.21 best | Nairo_nucleo | 136.0 | 2.40e-39 | 73.3% | 31.8% |
D3
medium
residues 152-183_418-479
Domain cluster:
rep: nucleoprotein__YP_010229112__Clo_Mor_virus__1810952__D152-182_436-479
D4
medium
residues 324-387
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02477.21 best | Nairo_nucleo | 91.6 | 7.00e-26 | 100.0% | 14.4% |
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7ebcA01 | 1.10.10.850 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.60 | 41.0 | 3.44e-01 | 75.0% | 39.7% |
| 4i0wB01 | 3.40.50.200 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain | 0.58 | 44.0 | 2.84e-01 | 84.4% | 65.1% |
| 3nbxX01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 43.0 | 3.08e-01 | 98.4% | 42.6% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1723600 | 3574.1.1.1 ↗ | alpha complex topology › Nucleocapsid protein › Nucleocapsid protein › Nucleocapsid protein › Nairo_nucleo | 0.84 | 76.0 | 4.44e-01 | 100.0% | 13.4% |
| 5018039 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.61 | 44.0 | 3.72e-01 | 78.1% | 80.9% |
| 5001590 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.56 | 38.0 | 4.09e-01 | 70.3% | 85.5% |
| 4426191 | 101.1.3.26 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like › YcbB | 0.56 | 41.0 | 3.12e-01 | 78.1% | 92.5% |
| 3182290 | 174.1.1.4 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › DUF4267 | 0.54 | 36.0 | 3.02e-01 | 70.3% | 76.9% |
| 3624435 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.53 | 36.0 | 2.79e-01 | 71.9% | 67.7% |
| 4946610 | 304.139.1.0 ↗ | a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related | 0.52 | 41.0 | 3.10e-01 | 87.5% | 83.0% |
| 3289077 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.50 | 40.0 | 3.40e-01 | 96.9% | 99.2% |