←Back to structures

nucleoprotein

Euk-Vir

Great_Saltee_virus

nucleoprotein__YP_009551659__Great_Saltee_virus__1810946

Identity

Accession:
YP_009551659 ↗
Protein ID:
nucleoprotein
Kingdom:
euk

Quality

81.0 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Bunyaviricetes› Hareavirales› Nairoviridae› Orthonairovirus› Great_Saltee_virus

TaxID: 1810946

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 202-303
PDB
Domain cluster: rep: nucleoprotein__YP_009553334__Tunis_virus__1810944__D200-304
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3u3iA02 1.20.58.1110 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.77 68.0 6.67e-01 95.1% 90.7%
2ra1A03 1.20.58.770 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.74 39.0 4.79e-01 82.4% 82.5%
1li5A02 1.20.120.640 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 0.71 40.0 4.33e-01 83.3% 65.5%
2oxlA00 1.20.5.5260 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.68 37.0 4.74e-01 84.3% 90.3%
2rkkA01 1.25.40.270 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Vacuolar protein sorting-associated protein vta1 0.66 46.0 3.95e-01 85.3% 46.8%
3vkgB03 1.20.58.1120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dynein motor heavy chain, linker domain, subdomain 4 0.66 54.0 4.64e-01 87.3% 73.1%
4k6jB00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.65 58.0 3.79e-01 100.0% 24.2%
3kkbA00 1.20.120.880 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Histidine kinase (KinB), sensor domain 0.65 44.0 4.06e-01 90.2% 55.6%
2crbA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.64 43.0 4.41e-01 89.2% 72.2%
1txuA02 1.20.1050.80 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › VPS9 domain 0.63 56.0 4.85e-01 100.0% 77.5%
4gmnA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.62 55.0 3.49e-01 99.0% 19.2%
4fxdA04 3.90.1600.10 Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain 0.62 51.0 4.48e-01 90.2% 83.7%
3bjdA01 1.10.1240.20 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Lytic transglycosylase, superhelical linker domain 0.61 44.0 4.73e-01 84.3% 88.6%
2o8pA00 1.20.190.20 Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › 14-3-3 domain 0.60 50.0 3.89e-01 89.2% 76.3%
6axgA01 1.20.870.10 Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 0.60 40.0 4.24e-01 83.3% 77.5%
3w3uA01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.59 51.0 2.95e-01 94.1% 13.7%
1nafA02 1.20.58.160 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 45.0 4.90e-01 83.3% 96.5%
1s35A01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 46.0 4.68e-01 83.3% 97.0%
3ut4A00 1.25.40.750 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Domain of unknown function DUF5071 0.58 43.0 4.01e-01 96.1% 63.3%
1f59A00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.56 47.0 3.12e-01 94.1% 35.7%
5gl7A01 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.55 47.0 4.02e-01 93.1% 92.2%
2r7rA05 1.10.357.80 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › 0.54 44.0 3.67e-01 86.3% 85.8%
1hciA04 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 41.0 4.03e-01 81.4% 82.5%
2o36A01 1.20.1050.40 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › Endopeptidase. Chain P; domain 1 0.53 44.0 4.13e-01 93.1% 86.7%
3r2cA00 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.52 42.0 3.87e-01 88.2% 99.3%
4etrB00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.52 44.0 4.12e-01 88.2% 88.5%
8sorA01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.52 45.0 3.14e-01 96.1% 36.3%
2j9wB00 1.20.120.1130 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Vps28 C-terminal domain 0.52 32.0 3.31e-01 86.3% 62.6%
5wp3B00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.51 38.0 3.90e-01 80.4% 90.2%
4l7mA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.50 41.0 3.16e-01 93.1% 44.4%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4983638 604.6.1.0 ↗ alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.72 43.0 5.16e-01 81.4% 88.4%
4960823 3352.1.1.2 ↗ alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › PMT_2 0.66 51.0 3.47e-01 88.2% 22.7%
3347255 109.4.1.1146 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_PUB 0.65 49.0 3.43e-01 96.1% 25.0%
3309555 109.4.1.603 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TAF1_subA 0.65 56.0 3.61e-01 96.1% 32.3%
3699646 610.1.1.1 ↗ alpha arrays › ERP29 C domain-like › ERP29 C domain-like › ERP29 C domain-like › ERp29 0.63 42.0 4.38e-01 90.2% 73.7%
3259233 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.62 52.0 3.20e-01 95.1% 14.5%
3190041 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 51.0 3.67e-01 93.1% 44.8%
3741033 109.4.1.1393 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF26715 0.61 53.0 4.33e-01 96.1% 52.4%
3739367 1002.1.1.1 ↗ alpha complex topology › Fluoride ion channel › Fluoride ion channel › Fluoride ion channel › CRCB 0.61 42.0 3.83e-01 70.6% 60.0%
4154511 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 54.0 4.40e-01 97.1% 81.1%
4310284 2498.1.1.143 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › DUF3318 0.61 49.0 3.95e-01 87.3% 69.5%
3631303 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 53.0 4.32e-01 100.0% 61.5%
3481604 109.4.1.765 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Vac14_Fab1_bd 0.60 48.0 4.10e-01 94.1% 54.4%
3469468 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 51.0 3.49e-01 96.1% 26.3%
3519771 109.4.1.1414 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_TTI1_C 0.59 52.0 3.76e-01 95.1% 53.6%
4960240 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 49.0 3.49e-01 96.1% 29.7%
3705522 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.58 49.0 4.14e-01 93.1% 68.0%
3257268 109.4.1.3300 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › IBN_N, Vac14_Fab1_bd, TPR_IMB1, TPR_IPO5 0.58 51.0 3.04e-01 100.0% 74.4%
3412589 603.1.1.136 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › HB_ELP1 0.58 44.0 3.61e-01 81.4% 70.0%
4054419 604.12.1.78 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › FUSC 0.57 52.0 4.44e-01 100.0% 90.3%
3829773 3684.1.1.2 ↗ alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › BPS1 0.57 52.0 4.01e-01 100.0% 98.7%
3818500 109.4.1.222 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DCB 0.57 50.0 4.28e-01 97.1% 78.8%
3566007 604.1.1.1 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.57 45.0 4.35e-01 84.3% 82.6%
3930837 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.56 44.0 4.21e-01 83.3% 90.0%
3198235 109.4.1.307 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Tho2 0.56 49.0 3.69e-01 100.0% 41.5%
3887313 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.56 44.0 4.28e-01 83.3% 85.2%
3905412 604.1.1.1 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.56 43.0 3.82e-01 81.4% 67.6%
3881724 604.1.1.1 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.56 44.0 4.22e-01 83.3% 88.7%
3514718 604.1.1.1 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.56 44.0 4.26e-01 84.3% 90.4%
3521044 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.56 43.0 4.26e-01 83.3% 90.0%
3808 604.1.1.1 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.55 45.0 4.45e-01 86.3% 91.5%
3707372 7039.1.1.0 ↗ a+b complex topology › Helical domain of PCIF1/CAPAM › Helical domain of PCIF1/CAPAM › Helical domain of PCIF1/CAPAM 0.55 42.0 3.09e-01 79.4% 89.6%
3935032 604.1.1.1 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.55 43.0 4.27e-01 83.3% 94.3%
3623615 109.4.1.222 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DCB 0.55 48.0 3.87e-01 99.0% 74.8%
3288863 2498.1.1.63 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Zn_peptidase 0.55 46.0 3.69e-01 94.1% 83.6%
3470544 604.1.1.1 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.55 44.0 4.58e-01 85.3% 98.9%
None — 0.53 42.0 3.05e-01 91.2% 30.9%
3306718 5059.1.1.1 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.53 45.0 3.67e-01 96.1% 86.8%
5020412 601.4.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains 0.53 47.0 4.66e-01 99.0% 94.3%
3287071 601.1.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.52 47.0 4.07e-01 100.0% 95.0%
3817615 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.52 42.0 4.22e-01 87.3% 85.7%
3560235 2004.1.1.184 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_11 0.51 43.0 2.79e-01 98.0% 19.0%
3812703 3758.1.1.7 ↗ alpha bundles › Bacterial hemolysins-like › Bacterial hemolysins › Bacterial hemolysins › BPS1 0.51 44.0 3.51e-01 99.0% 97.3%
3966840 150.1.1.8 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › DUF2383 0.50 44.0 3.94e-01 96.1% 73.1%
D2 medium residues 56-95_174-196_426-454
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2xzmO02 1.10.287.10 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding 0.58 34.0 3.82e-01 95.7% 75.7%
2p4vA01 1.10.287.180 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Transcription elongation factor, GreA/GreB, N-terminal domain 0.57 35.0 3.77e-01 93.5% 72.4%
6zhiB02 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.55 33.0 3.44e-01 87.0% 63.9%
2i0mA01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.54 41.0 3.98e-01 100.0% 71.7%
1at9A00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.54 43.0 3.24e-01 100.0% 34.8%
3bvxA02 1.20.1270.50 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Glycoside hydrolase family 38, central domain 0.53 33.0 3.16e-01 90.2% 51.4%
6xz3A01 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.53 44.0 4.11e-01 100.0% 71.8%
6ig5A01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.53 33.0 2.87e-01 90.2% 41.3%
6xm1A02 3.90.830.10 Alpha Beta › Alpha-Beta Complex › Syntaxin Binding Protein 1; Chain A, domain 2 › Sec1/Munc18 (SM) protein, domain 3a 0.53 37.0 3.49e-01 100.0% 59.3%
4oe8C00 1.10.8.1170 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.52 35.0 3.68e-01 85.9% 74.7%
3a7mA01 1.20.58.380 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Flagellar protein flit. 0.52 35.0 3.35e-01 100.0% 58.2%
4nooB00 1.10.8.1160 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.52 32.0 3.22e-01 91.3% 60.0%
4p55B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 30.0 2.98e-01 80.4% 54.2%
2es9A00 1.20.1290.30 Mainly Alpha › Up-down Bundle › AhpD-like › 0.50 31.0 3.08e-01 100.0% 57.0%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4636881 140.1.1.11 ↗ alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_1 0.65 44.0 3.57e-01 100.0% 37.1%
3957336 604.5.1.2 ↗ alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU 0.61 46.0 4.52e-01 100.0% 74.0%
3605711 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.59 38.0 3.98e-01 98.9% 73.8%
3827313 633.4.1.0 ↗ alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor 0.58 38.0 3.62e-01 100.0% 55.5%
3904307 3755.4.1.70 ↗ alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › KIF9 0.57 35.0 3.17e-01 90.2% 42.2%
3755586 3291.1.1.118 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › KIF9 0.57 35.0 3.08e-01 90.2% 40.0%
3700654 6110.1.1.1 ↗ alpha superhelices › Linker domain of cytoplasmic dynein heavy chain › Linker domain of cytoplasmic dynein heavy chain › Linker domain of cytoplasmic dynein heavy chain › DHC_N2 0.55 37.0 2.38e-01 90.2% 14.4%
4671217 140.1.1.11 ↗ alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_1 0.55 36.0 3.54e-01 100.0% 59.0%
3498465 604.6.1.0 ↗ alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.51 39.0 3.56e-01 100.0% 60.8%
3931056 633.16.1.0 ↗ alpha bundles › Bromodomain-like › PMT helical bundle domain-like › PMT helical bundle domain-like 0.51 40.0 3.84e-01 83.7% 100.0%
3964012 3831.1.1.1 ↗ alpha bundles › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › LprI 0.51 32.0 3.09e-01 90.2% 52.7%
5007799 5069.1.1.0 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes 0.50 39.0 3.81e-01 100.0% 76.0%
D3 medium residues 96-157
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02477.21 best Nairo_nucleo 34.1 2.00e-08 98.4% 12.9%
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3e46A02 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.66 33.0 3.82e-01 96.8% 67.4%
2ptfB02 1.20.58.290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. 0.62 41.0 4.26e-01 82.3% 73.7%
3m9vA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.61 47.0 3.45e-01 85.5% 31.8%
7zxkC01 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.60 48.0 3.69e-01 90.3% 98.7%
4wzxA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.58 40.0 3.83e-01 72.6% 65.3%
4eqqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 32.0 3.56e-01 96.8% 72.9%
1w36C06 1.10.10.990 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.56 38.0 3.63e-01 77.4% 61.1%
4m70I00 1.20.5.4130 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.55 49.0 4.09e-01 100.0% 61.1%
1r4gA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.54 34.0 3.59e-01 100.0% 73.6%
2l09A01 1.10.8.550 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Proto-chlorophyllide reductase 57 kD subunit B 0.54 32.0 3.47e-01 80.6% 67.3%
4qozC00 1.10.8.1120 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Histone RNA hairpin-binding protein RNA-binding domain 0.54 44.0 4.21e-01 91.9% 79.5%
5dikA00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.54 37.0 3.07e-01 71.0% 69.6%
6tkvA01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.53 43.0 4.27e-01 91.9% 89.7%
4z7xB00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.53 42.0 3.05e-01 93.5% 81.2%
7vevA01 3.10.105.10 Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 0.53 44.0 3.07e-01 100.0% 96.8%
6ynwH01 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.53 44.0 4.21e-01 95.2% 85.1%
7qaqA01 3.40.50.11710 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cyclodipeptide synthase 0.53 46.0 3.18e-01 100.0% 35.2%
4gf0A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.51 43.0 3.63e-01 98.4% 66.4%
3e3vA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 30.0 3.15e-01 100.0% 62.3%
2fh0A00 1.10.8.140 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › PDCD5, DNA-binding domain 0.51 35.0 3.30e-01 93.5% 56.8%
2p0tA01 1.10.60.30 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › PSPTO4464-like domains 0.51 36.0 3.49e-01 80.6% 67.1%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5084007 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.67 41.0 3.86e-01 100.0% 50.7%
5024032 150.5.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.67 56.0 4.14e-01 93.5% 36.3%
3594352 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.63 39.0 3.73e-01 100.0% 50.7%
3933926 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.62 37.0 3.71e-01 98.4% 55.4%
5066226 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.61 42.0 4.23e-01 90.3% 70.8%
4991136 4009.1.1.0 ↗ alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins 0.60 41.0 4.22e-01 100.0% 75.0%
3322405 3711.1.1.4 ↗ alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein › DOG1 0.60 51.0 3.50e-01 100.0% 50.2%
3587320 604.39.1.5 ↗ alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › ECF_trnsprt 0.60 48.0 3.50e-01 88.7% 32.9%
3399531 1134.1.1.0 ↗ alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain 0.60 43.0 3.76e-01 79.0% 50.0%
4940088 5058.1.1.16 ↗ alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st_1 0.59 49.0 4.19e-01 95.2% 76.2%
3239225 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.58 50.0 3.77e-01 100.0% 89.7%
5059490 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.58 50.0 3.53e-01 100.0% 56.1%
3692552 5071.3.1.0 ↗ alpha bundles › cytochrome bc1 complex 11 kDa protein-like › DUF465 › DUF465 0.58 47.0 4.64e-01 98.4% 86.2%
3282465 5069.1.3.0 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits 0.58 48.0 4.22e-01 93.5% 68.4%
4290511 7572.1.1.1 ↗ a/b three-layered sandwiches › Phosphofructokinase C-terminal domain › Phosphofructokinase C-terminal domain › Phosphofructokinase C-terminal domain › PFK 0.57 47.0 3.70e-01 100.0% 78.1%
3212522 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.57 36.0 3.77e-01 88.7% 70.9%
3973396 101.1.17.0 ↗ alpha arrays › HTH › HTH › FF domain 0.56 45.0 4.09e-01 98.4% 68.4%
3514703 192.7.1.0 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.56 46.0 4.26e-01 93.5% 88.7%
5012157 605.1.1.354 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › MS_channel_1st_1 0.54 48.0 4.31e-01 100.0% 97.6%
4494528 632.2.1.40 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › DUF515 0.53 33.0 3.47e-01 100.0% 70.9%
4110341 2484.1.1.48 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II 0.52 41.0 2.98e-01 87.1% 85.6%
D4 medium residues 158-173_455-497
PDB
Domain cluster: representative
D5 medium residues 315-425
PDB
Domain cluster: rep: nucleocapsid_protein,_partial__YP_009666114__Chim_orthonairovirus__2170062__D314-412
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02477.21 best Nairo_nucleo 101.4 7.80e-29 100.0% 23.7%