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nucleoprotein

Euk-Vir

Caligus_rogercresseyi_rhabdovirus

nucleoprotein__YP_009666511__Caligus_rogercresseyi_rhabdovirus__1921414

Identity

Accession:: YP_009666511 ↗
Protein ID:: nucleoprotein
Kingdom:: euk

Quality

74.0 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Rhabdoviridae› Caligrhavirus› Caligus_rogercresseyi_rhabdovirus

TaxID: 1921414

Cluster

View cluster (144 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 40-221

PDB

Domain cluster: rep: nucleoprotein__YP_010084457__Lepeophtheirus_salmonis_rhabdovirus_127__1573761__D41-226

CATH (13)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3hhwK01	1.10.3570.10	Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like fold › Rhabdovirus nucleocapsid protein like domain	0.80	75.0	7.56e-01	99.5%	99.5%
3f2eA00	1.20.58.800	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.70	30.0	4.46e-01	78.6%	89.2%
3fblA00	1.20.58.800	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.69	31.0	4.60e-01	71.4%	95.1%
2lahA00	1.25.40.430	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.64	31.0	3.36e-01	91.8%	51.2%
3fbzA01	1.20.58.800	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.60	31.0	4.07e-01	81.3%	88.2%
5cl3A00	1.25.10.90	Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant ›	0.59	36.0	3.34e-01	100.0%	46.8%
2ii2A04	1.10.220.10	Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin	0.58	27.0	3.92e-01	84.6%	98.7%
5jj6B01	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.58	29.0	3.81e-01	93.4%	86.5%
2b6cA02	1.25.40.290	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › ARM repeat domains	0.55	30.0	3.85e-01	97.3%	95.9%
1lshA02	1.25.10.20	Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Vitellinogen, superhelical	0.54	35.0	2.88e-01	97.8%	34.9%
1a41A02	1.20.120.380	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2	0.52	26.0	3.39e-01	78.6%	88.3%
2zttA00	6.10.140.720	Special › Helix non-globular › Helix Hairpins ›	0.51	21.0	3.16e-01	97.3%	90.4%
4q5nA02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.51	30.0	3.69e-01	85.7%	92.9%

ECOD (15)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2966640	566.2.1.1 ↗	alpha complex topology › P40 nucleoprotein-like › Rhabdovirus nucleocapsid protein › Rhabdovirus nucleocapsid protein › Rhabdo_ncap	0.83	79.0	5.93e-01	100.0%	45.8%
4846751	566.2.1.1 ↗	alpha complex topology › P40 nucleoprotein-like › Rhabdovirus nucleocapsid protein › Rhabdovirus nucleocapsid protein › Rhabdo_ncap	0.83	78.0	6.69e-01	100.0%	69.6%
3719809	592.1.1.0 ↗	alpha arrays › PWI domain-like › PWI domain › PWI domain	0.64	30.0	3.98e-01	74.7%	81.0%
4226337	101.11.1.1 ↗	alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase	0.62	26.0	3.94e-01	73.1%	90.0%
3199705	109.4.1.1348 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1, TPR_7, TPR_10, TPR_12	0.55	33.0	3.01e-01	96.2%	42.4%
3783914	109.4.1.356 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans	0.54	35.0	2.57e-01	100.0%	24.1%
3611089	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.53	32.0	3.81e-01	87.9%	87.2%
4025817	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.53	39.0	3.27e-01	97.3%	44.4%
3738663	109.4.1.70 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CID	0.53	39.0	4.13e-01	98.9%	85.5%
3402666	101.1.1.65 ↗	alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_4	0.52	28.0	3.73e-01	88.5%	97.9%
3704864	603.1.1.0 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins	0.51	31.0	3.72e-01	85.2%	90.0%
4023505	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.51	27.0	3.61e-01	88.5%	96.8%
3738124	2003.1.2.18 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain	0.51	37.0	2.74e-01	73.1%	73.6%
4022819	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.51	36.0	3.76e-01	99.5%	78.2%
3429029	611.3.1.17 ↗	alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › TELO2_ARM	0.51	34.0	3.63e-01	95.1%	76.2%

D2 medium residues 222-306

PDB

Domain cluster: rep: nucleocapsid__YP_009302014__Wuhan_Louse_Fly_Virus_10__1608114__D226-319_345-374

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00945.24 best	Rhabdo_ncap	83.3	2.40e-23	100.0%	20.7%

D3 medium residues 307-342_369-452

PDB

Domain cluster: representative

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1werA01	1.10.506.10	Mainly Alpha › Orthogonal Bundle › GTPase Activation - p120GAP; domain 1 › GTPase Activation - p120gap; domain 1	0.55	46.0	4.12e-01	93.3%	87.5%
4b7hA03	1.20.1370.60	Mainly Alpha › Up-down Bundle › Hemocyanin, N-terminal domain ›	0.54	35.0	3.61e-01	80.8%	68.7%
4pklA00	1.20.920.10	Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like	0.50	36.0	3.74e-01	74.2%	81.8%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3647237	611.3.1.0 ↗	alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	0.51	31.0	3.18e-01	88.3%	60.0%
3213662	109.4.1.871 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › INTS1_R4	0.51	29.0	2.73e-01	86.7%	42.7%