←Back to structures
nucleoprotein
Euk-VirLepeophtheirus_salmonis_rhabdovirus_9
nucleoprotein__YP_010084452__Lepeophtheirus_salmonis_rhabdovirus_9__1573760
Identity
- Accession:
- YP_010084452 ↗
- Protein ID:
- nucleoprotein
- Kingdom:
- euk
Quality
72.6
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Monjiviricetes›
Mononegavirales›
Rhabdoviridae›
Caligrhavirus›
Lepeophtheirus_salmonis_rhabdovirus_9
TaxID: 1573760
Cluster
View cluster (34 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 56-243
Domain cluster:
rep: nucleoprotein__YP_010084457__Lepeophtheirus_salmonis_rhabdovirus_127__1573761__D41-226
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2gttC01 | 1.10.3570.10 | Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like fold › Rhabdovirus nucleocapsid protein like domain | 0.81 | 77.0 | 7.62e-01 | 99.5% | 99.0% |
| 3hhwK01 | 1.10.3570.10 | Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like fold › Rhabdovirus nucleocapsid protein like domain | 0.80 | 73.0 | 7.43e-01 | 99.5% | 99.5% |
| 1e1dA02 | 1.20.1270.20 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.61 | 26.0 | 3.83e-01 | 89.9% | 88.1% |
| 4j8sA00 | 1.25.40.840 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › CCR4-NOT transcription complex subunit 1 TTP binding domain | 0.50 | 37.0 | 3.85e-01 | 99.5% | 80.0% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2992377 | 566.2.1.1 ↗ | alpha complex topology › P40 nucleoprotein-like › Rhabdovirus nucleocapsid protein › Rhabdovirus nucleocapsid protein › Rhabdo_ncap | 0.82 | 78.0 | 6.10e-01 | 100.0% | 52.3% |
| 2966640 | 566.2.1.1 ↗ | alpha complex topology › P40 nucleoprotein-like › Rhabdovirus nucleocapsid protein › Rhabdovirus nucleocapsid protein › Rhabdo_ncap | 0.82 | 76.0 | 5.77e-01 | 100.0% | 45.8% |
| 4846751 | 566.2.1.1 ↗ | alpha complex topology › P40 nucleoprotein-like › Rhabdovirus nucleocapsid protein › Rhabdovirus nucleocapsid protein › Rhabdo_ncap | 0.82 | 78.0 | 6.70e-01 | 100.0% | 69.9% |
| 5029951 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.62 | 24.0 | 3.86e-01 | 79.8% | 98.5% |
| 3944935 | 6155.2.1.3 ↗ | alpha duplicates or obligate multimers › TOG superfamily › PnuC › PnuC › Imp-YgjV | 0.51 | 30.0 | 3.20e-01 | 74.5% | 65.0% |
D2
medium
residues 247-348
Domain cluster:
rep: nucleocapsid_protein__YP_009094263__Grass_carp_virus__1288359__D228-303
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00945.24 best | Rhabdo_ncap | 73.6 | 2.10e-20 | 91.2% | 19.3% |
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2gicD02 | 1.10.3610.10 | Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like › Nucleoprotein | 0.94 | 89.0 | 6.92e-01 | 100.0% | 51.8% |
| 2gttJ02 | 1.10.3610.10 | Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like › Nucleoprotein | 0.92 | 87.0 | 6.86e-01 | 100.0% | 53.7% |
| 2azjA00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.52 | 40.0 | 2.98e-01 | 83.3% | 72.1% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2992377 | 566.2.1.1 ↗ | alpha complex topology › P40 nucleoprotein-like › Rhabdovirus nucleocapsid protein › Rhabdovirus nucleocapsid protein › Rhabdo_ncap | 0.93 | 89.0 | 5.79e-01 | 100.0% | 27.6% |
| 2966640 | 566.2.1.1 ↗ | alpha complex topology › P40 nucleoprotein-like › Rhabdovirus nucleocapsid protein › Rhabdovirus nucleocapsid protein › Rhabdo_ncap | 0.92 | 87.0 | 5.59e-01 | 100.0% | 25.2% |
D3
medium
residues 349-385_420-482