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nucleoprotein
Euk-VirVeterinary_Pathology_Zurich_virus_1
nucleoprotein__YP_010086257__Veterinary_Pathology_Zurich_virus_1__2447921
Identity
- Accession:
- YP_010086257 ↗
- Protein ID:
- nucleoprotein
- Kingdom:
- euk
Quality
71.6
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Bunyaviricetes›
Hareavirales›
Arenaviridae›
Hartmanivirus›
Veterinary_Pathology_Zurich_virus_1
TaxID: 2447921
Cluster
View cluster (3 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 125-187
D2
high
residues 389-588
Domain cluster:
rep: nucleoprotein__YP_010086252__Dante_Muikkunen_virus_1__2447916__D386-583
D3
medium
residues 5-22_82-120_295-367
Domain cluster:
rep: nucleoprotein__YP_006590087__CAS_virus__1223561__D1-21_80-113_255-329
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3t5qG01 | 1.10.150.550 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Arenavirus nucleocapsid protein, head domain | 0.84 | 65.0 | 7.20e-01 | 100.0% | 100.0% |
| 3t69A02 | 3.30.420.310 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 2-keto-3-deoxy-galactonokinase, C-terminal domain | 0.53 | 40.0 | 3.40e-01 | 81.5% | 57.1% |
| 1xjkA00 | 3.20.70.20 | Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › | 0.51 | 38.0 | 2.51e-01 | 79.2% | 74.7% |
| 3kflA03 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.51 | 39.0 | 3.53e-01 | 80.0% | 92.0% |
| 1t98A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 26.0 | 3.02e-01 | 76.9% | 70.1% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 406722 | 3248.1.1.1 ↗ | alpha complex topology › N-terminal domain in Lassa fever virus nucleoprotein › N-terminal domain in Lassa fever virus nucleoprotein › N-terminal domain in Lassa fever virus nucleoprotein › Arena_nucleocap | 0.81 | 76.0 | 5.54e-01 | 100.0% | 99.7% |
| 3605439 | 192.4.1.0 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) | 0.56 | 29.0 | 3.66e-01 | 96.2% | 88.6% |
| 4019370 | 7502.1.1.0 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS | 0.52 | 37.0 | 3.43e-01 | 72.3% | 83.6% |
D4
medium
residues 23-81_199-294
Domain cluster:
rep: nucleoprotein__YP_010086252__Dante_Muikkunen_virus_1__2447916__D25-81_207-281