nucleoprotein

Euk-Vir

Harrison_Dam_virus

nucleoprotein__YP_010086573__Harrison_Dam_virus__1569259

Identity

86.8 mean pLDDT

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Rhabdoviridae› Sunrhavirus› Harrison_Dam_virus

TaxID: 1569259

View cluster (144 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 35-219

PDB

Domain cluster: rep: nucleocapsid_protein__YP_008686596__Drosophila_obscura_sigmavirus_10A__666962__D36-146_214-247

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00945.24 best	Rhabdo_ncap	131.6	5.10e-38	99.5%	42.4%

D2 medium residues 221-322

PDB

Domain cluster: rep: nucleocapsid__YP_009302014__Wuhan_Louse_Fly_Virus_10__1608114__D226-319_345-374

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00945.24 best	Rhabdo_ncap	78.7	6.00e-22	99.0%	24.1%

D3 medium residues 323-341_377-425

PDB

Domain cluster: rep: nucleoprotein__YP_009362111__Marco_virus__1158190__D382-436

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2gicD02	1.10.3610.10	Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like › Nucleoprotein	0.91	83.0	5.82e-01	98.5%	47.7%
2gttJ02	1.10.3610.10	Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like › Nucleoprotein	0.78	69.0	5.00e-01	100.0%	46.3%
2e52B01	3.40.91.70	Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Type II restriction endonuclease, HindIII	0.56	38.0	2.71e-01	72.1%	50.9%
4g26A01	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.52	40.0	2.69e-01	86.8%	29.0%

ECOD (6)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2966640	566.2.1.1 ↗	alpha complex topology › P40 nucleoprotein-like › Rhabdovirus nucleocapsid protein › Rhabdovirus nucleocapsid protein › Rhabdo_ncap	0.89	82.0	4.93e-01	100.0%	20.5%
3691920	109.4.1.356 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans	0.52	41.0	2.51e-01	100.0%	12.2%
4175971	604.3.1.43 ↗	alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › FliX	0.51	38.0	3.50e-01	92.6%	61.1%
3381261	3588.1.1.2 ↗	alpha complex topology › RNAi polymerase helical domain › RNAi polymerase helical domain › RNAi polymerase helical domain › RdRP, PF26253	0.51	42.0	2.67e-01	100.0%	88.9%
3828651	109.4.1.621 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_3	0.51	37.0	3.15e-01	80.9%	91.2%
4521765	604.29.1.1 ↗	alpha bundles › Spectrin repeat-like › Trehalose-6-phosphate phosphatase N-terminal helical bundle › Trehalose-6-phosphate phosphatase N-terminal helical bundle › T6PP_N	0.51	39.0	3.24e-01	85.3%	70.4%