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nucleoprotein
Euk-VirOhlsdorf_virus
nucleoprotein__YP_010086782__Ohlsdorf_virus__2040592
Identity
- Accession:
- YP_010086782 ↗
- Protein ID:
- nucleoprotein
- Kingdom:
- euk
Quality
79.5
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Monjiviricetes›
Mononegavirales›
Rhabdoviridae›
Ohlsrhavirus›
Ohlsdorf_virus
TaxID: 2040592
Cluster
View cluster (34 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 65-249
Domain cluster:
rep: nucleocapsid_protein__YP_008686596__Drosophila_obscura_sigmavirus_10A__666962__D36-146_214-247
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00945.24 best | Rhabdo_ncap | 80.2 | 2.10e-22 | 100.0% | 41.2% |
D2
medium
residues 252-351
Domain cluster:
rep: nucleoprotein__YP_010086582__Sawgrass_virus__1620896__D235-262_281-309
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00945.24 best | Rhabdo_ncap | 78.4 | 7.60e-22 | 99.0% | 23.7% |
D3
medium
residues 352-459
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2gicD02 | 1.10.3610.10 | Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like › Nucleoprotein | 0.70 | 58.0 | 4.66e-01 | 89.8% | 48.2% |
| 2lt3A01 | 1.20.58.1290 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › CarD-like, C-terminal domain | 0.63 | 32.0 | 3.38e-01 | 92.6% | 53.0% |
| 1wh4A01 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.50 | 34.0 | 3.65e-01 | 92.6% | 80.9% |
| 2hjmA01 | 1.20.120.460 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › protein pf1176 like | 0.50 | 37.0 | 4.11e-01 | 98.1% | 100.0% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2966640 | 566.2.1.1 ↗ | alpha complex topology › P40 nucleoprotein-like › Rhabdovirus nucleocapsid protein › Rhabdovirus nucleocapsid protein › Rhabdo_ncap | 0.77 | 57.0 | 3.76e-01 | 90.7% | 20.7% |
| 4021456 | 633.1.1.0 ↗ | alpha bundles › Bromodomain-like › Bromodomain › Bromodomain | 0.54 | 44.0 | 4.35e-01 | 100.0% | 82.6% |
| 3472979 | 1021.1.1.2 ↗ | a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › RNA_hel_CTD | 0.52 | 40.0 | 4.12e-01 | 99.1% | 85.7% |
| 3551902 | 3919.1.1.4 ↗ | alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › COMMD1_N | 0.50 | 27.0 | 2.71e-01 | 100.0% | 47.3% |