←Back to structures

nucleoprotein

Euk-Vir

Bahia_Grande_virus

nucleoprotein__YP_010087303__Bahia_Grande_virus__932699

Identity

Accession:: YP_010087303 ↗
Protein ID:: nucleoprotein
Kingdom:: euk

Quality

71.6 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Rhabdoviridae› Barhavirus› Bahia_Grande_virus

TaxID: 932699

Cluster

View cluster (34 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 38-234

PDB

Domain cluster: rep: nucleocapsid_protein__YP_008686596__Drosophila_obscura_sigmavirus_10A__666962__D36-146_214-247

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00945.24 best	Rhabdo_ncap	30.5	2.50e-07	99.0%	32.9%

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3hhwK01	1.10.3570.10	Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like fold › Rhabdovirus nucleocapsid protein like domain	0.81	72.0	7.47e-01	98.0%	100.0%
2gttC01	1.10.3570.10	Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like fold › Rhabdovirus nucleocapsid protein like domain	0.78	73.0	7.39e-01	98.0%	100.0%
1n93X01	1.10.3040.10	Mainly Alpha › Orthogonal Bundle › borna disease virus nucleoprotein, domain 1 › borna disease virus nucleoprotein, domain 1	0.59	53.0	5.20e-01	96.4%	91.3%
2jacA00	3.40.30.10	Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin	0.54	27.0	3.46e-01	95.9%	83.3%
2z1qB04	1.20.140.10	Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3	0.52	29.0	3.39e-01	88.8%	77.2%

ECOD (11)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2966640	566.2.1.1 ↗	alpha complex topology › P40 nucleoprotein-like › Rhabdovirus nucleocapsid protein › Rhabdovirus nucleocapsid protein › Rhabdo_ncap	0.81	75.0	5.76e-01	100.0%	47.2%
2992377	566.2.1.1 ↗	alpha complex topology › P40 nucleoprotein-like › Rhabdovirus nucleocapsid protein › Rhabdovirus nucleocapsid protein › Rhabdo_ncap	0.80	76.0	6.04e-01	100.0%	53.7%
4846751	566.2.1.1 ↗	alpha complex topology › P40 nucleoprotein-like › Rhabdovirus nucleocapsid protein › Rhabdovirus nucleocapsid protein › Rhabdo_ncap	0.80	76.0	6.68e-01	100.0%	71.7%
3726788	109.27.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain	0.61	24.0	3.92e-01	85.3%	100.0%
3335077	109.4.1.195 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_11	0.59	29.0	2.90e-01	95.9%	43.0%
3804928	109.59.1.18 ↗	alpha superhelices › Repetitive alpha hairpins › Intraflagellar transport protein 80 (IFT80) C-terminal domain › Intraflagellar transport protein 80 (IFT80) C-terminal domain › RIC1	0.58	32.0	2.67e-01	94.9%	30.6%
3877844	529.1.1.2 ↗	few secondary structure elements › Anaphylotoxins (complement system) › Anaphylotoxins (complement system) › Anaphylotoxins (complement system) › BSMAP	0.56	26.0	3.70e-01	73.1%	94.4%
3484856	5050.1.1.9 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1	0.51	27.0	2.86e-01	86.3%	54.9%
2393540	633.1.1.1 ↗	alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain	0.51	29.0	3.50e-01	87.8%	85.0%
3495508	109.6.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › Ras GEF › Ras GEF	0.50	38.0	2.84e-01	91.4%	30.2%
4095142	109.4.1.465 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SPO22	0.50	25.0	3.06e-01	74.6%	71.2%

D2 high residues 239-355

PDB

Domain cluster: rep: nucleocapsid_protein__YP_009551688__Merida-like_virus_KE-2017a__1969830__D268-379

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00945.24 best	Rhabdo_ncap	56.7	2.90e-15	99.2%	25.4%