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nucleoprotein
Euk-VirMuir_Springs_virus
nucleoprotein__YP_010087309__Muir_Springs_virus__932700
Identity
- Accession:
- YP_010087309 ↗
- Protein ID:
- nucleoprotein
- Kingdom:
- euk
Quality
73.7
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Monjiviricetes›
Mononegavirales›
Rhabdoviridae›
Barhavirus›
Muir_Springs_virus
TaxID: 932700
Cluster
View cluster (34 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 38-124_201-230
Domain cluster:
rep: nucleocapsid_protein__YP_008686596__Drosophila_obscura_sigmavirus_10A__666962__D36-146_214-247
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3hhwK01 | 1.10.3570.10 | Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like fold › Rhabdovirus nucleocapsid protein like domain | 0.85 | 79.0 | 6.63e-01 | 97.4% | 98.4% |
| 2gttC01 | 1.10.3570.10 | Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like fold › Rhabdovirus nucleocapsid protein like domain | 0.77 | 69.0 | 5.80e-01 | 97.4% | 98.5% |
| 5efrA02 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.61 | 30.0 | 3.72e-01 | 93.2% | 75.3% |
| 6wimA02 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.60 | 31.0 | 3.80e-01 | 93.2% | 77.0% |
| 3onqA01 | 1.20.5.5100 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.60 | 22.0 | 3.54e-01 | 70.1% | 92.9% |
| 4wesB02 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.57 | 30.0 | 3.21e-01 | 72.6% | 55.8% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2966640 | 566.2.1.1 ↗ | alpha complex topology › P40 nucleoprotein-like › Rhabdovirus nucleocapsid protein › Rhabdovirus nucleocapsid protein › Rhabdo_ncap | 0.82 | 77.0 | 5.18e-01 | 100.0% | 46.3% |
| 2992377 | 566.2.1.1 ↗ | alpha complex topology › P40 nucleoprotein-like › Rhabdovirus nucleocapsid protein › Rhabdovirus nucleocapsid protein › Rhabdo_ncap | 0.79 | 74.0 | 5.09e-01 | 100.0% | 52.6% |
| 4846751 | 566.2.1.1 ↗ | alpha complex topology › P40 nucleoprotein-like › Rhabdovirus nucleocapsid protein › Rhabdovirus nucleocapsid protein › Rhabdo_ncap | 0.79 | 74.0 | 5.49e-01 | 100.0% | 70.3% |
| 3296274 | 3121.1.1.3 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA_2 | 0.59 | 31.0 | 3.80e-01 | 70.1% | 78.7% |
| 3165909 | 3121.1.1.0 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain | 0.59 | 29.0 | 3.50e-01 | 88.9% | 70.7% |
| 4350626 | 3681.1.1.0 ↗ | a+b complex topology › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit | 0.56 | 40.0 | 3.97e-01 | 75.2% | 70.8% |
| 3223582 | 7516.1.1.0 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases | 0.51 | 41.0 | 3.18e-01 | 91.5% | 90.8% |
D2
medium
residues 137-200_231-252
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1txuA01 | 1.10.246.120 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.74 | 51.0 | 5.02e-01 | 72.1% | 79.8% |
| 3bniB00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.67 | 46.0 | 3.71e-01 | 72.1% | 41.5% |
| 3vw4A01 | 1.10.340.50 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › | 0.64 | 45.0 | 4.46e-01 | 74.4% | 80.4% |
| 8sbeA01 | 1.20.1250.20 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains | 0.60 | 45.0 | 3.48e-01 | 79.1% | 84.2% |
| 1s7zA01 | 1.20.120.780 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DNA mimic ocr | 0.60 | 41.0 | 3.94e-01 | 72.1% | 100.0% |
| 1owlA02 | 1.25.40.80 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.56 | 38.0 | 3.42e-01 | 70.9% | 52.0% |
| 3a7mA01 | 1.20.58.380 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Flagellar protein flit. | 0.56 | 39.0 | 3.59e-01 | 72.1% | 69.1% |
| 3f4mA00 | 1.20.1440.160 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tumor necrosis factor alpha-induced protein 8-like | 0.54 | 38.0 | 3.21e-01 | 74.4% | 70.1% |
| 3of4A00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.53 | 41.0 | 3.20e-01 | 86.0% | 71.0% |
| 4bg5B00 | 1.10.3160.10 | Mainly Alpha › Orthogonal Bundle › Bbcrasp-1 › Bbcrasp-1 | 0.52 | 40.0 | 3.10e-01 | 84.9% | 73.4% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4287075 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.69 | 49.0 | 4.89e-01 | 74.4% | 82.2% |
| 4594470 | 3651.1.1.1 ↗ | alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › IF-2B | 0.67 | 47.0 | 3.99e-01 | 72.1% | 55.7% |
| 5074726 | 633.10.1.0 ↗ | alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like | 0.57 | 41.0 | 4.20e-01 | 82.6% | 77.6% |
| 3742271 | 5050.1.1.14 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › ATG22 | 0.56 | 43.0 | 3.15e-01 | 83.7% | 72.9% |
| 3230224 | 708.1.1.0 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain | 0.54 | 41.0 | 3.35e-01 | 81.4% | 72.6% |
| 5005176 | 604.15.1.0 ↗ | alpha bundles › Spectrin repeat-like › Efb C-domain-like › Efb C-domain-like | 0.53 | 36.0 | 3.97e-01 | 70.9% | 96.9% |
| 5053839 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 37.0 | 3.86e-01 | 73.3% | 98.7% |
| 4111221 | 3413.1.1.1 ↗ | alpha bundles › Inositol phosphate phosphatase sopB N-terminal domain › Inositol phosphate phosphatase sopB N-terminal domain › Inositol phosphate phosphatase sopB N-terminal domain › IpgD | 0.51 | 39.0 | 3.75e-01 | 86.0% | 71.0% |
| 5029982 | 2003.1.5.66 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 | 0.50 | 35.0 | 2.54e-01 | 74.4% | 30.7% |
D3
medium
residues 253-355
Domain cluster:
rep: nucleocapsid_protein__YP_009551688__Merida-like_virus_KE-2017a__1969830__D268-379
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00945.24 best | Rhabdo_ncap | 51.6 | 1.00e-13 | 94.2% | 19.0% |
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2gicD02 | 1.10.3610.10 | Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like › Nucleoprotein | 0.95 | 90.0 | 7.03e-01 | 100.0% | 52.3% |
| 2gttJ02 | 1.10.3610.10 | Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like › Nucleoprotein | 0.91 | 87.0 | 6.85e-01 | 100.0% | 54.2% |
| 1n93X02 | 1.10.3050.10 | Mainly Alpha › Orthogonal Bundle › borna disease virus nucleoprotein, domain 2 › borna disease virus nucleoprotein, domain 2 | 0.67 | 57.0 | 5.28e-01 | 98.1% | 74.0% |
| 4aflA00 | 6.10.140.1740 | Special › Helix non-globular › Helix Hairpins › | 0.58 | 33.0 | 3.34e-01 | 78.6% | 54.9% |
| 1c5aA00 | 1.20.91.20 | Mainly Alpha › Up-down Bundle › Influenza Virus Matrix Protein; Chain A, domain 1 › Anaphylotoxins (complement system) | 0.58 | 35.0 | 4.23e-01 | 91.3% | 95.4% |
| 2a3qA00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.57 | 36.0 | 3.56e-01 | 90.3% | 58.4% |
| 2jqqA00 | 1.20.58.1240 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.56 | 40.0 | 3.53e-01 | 73.8% | 92.9% |
| 3ipiA00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.51 | 37.0 | 2.79e-01 | 76.7% | 47.4% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2966640 | 566.2.1.1 ↗ | alpha complex topology › P40 nucleoprotein-like › Rhabdovirus nucleocapsid protein › Rhabdovirus nucleocapsid protein › Rhabdo_ncap | 0.94 | 90.0 | 5.75e-01 | 100.0% | 25.5% |
| 2992377 | 566.2.1.1 ↗ | alpha complex topology › P40 nucleoprotein-like › Rhabdovirus nucleocapsid protein › Rhabdovirus nucleocapsid protein › Rhabdo_ncap | 0.92 | 88.0 | 5.74e-01 | 100.0% | 27.9% |
| 3653994 | 109.4.1.1277 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2, TPR_24 | 0.58 | 43.0 | 3.09e-01 | 78.6% | 35.9% |
| 3306314 | 109.4.1.1261 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2, PPR_long | 0.57 | 43.0 | 3.63e-01 | 78.6% | 68.6% |
| 3378962 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.57 | 40.0 | 3.61e-01 | 72.8% | 72.4% |
| 3320382 | 109.4.1.1257 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2 | 0.56 | 41.0 | 3.76e-01 | 77.7% | 82.9% |
| 3537641 | 109.3.1.96 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4 | 0.55 | 39.0 | 2.77e-01 | 74.8% | 40.6% |
| 3318106 | 109.4.1.1282 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, TPR_24 | 0.54 | 40.0 | 2.91e-01 | 77.7% | 48.4% |
| 3346105 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.54 | 37.0 | 3.58e-01 | 70.9% | 80.0% |
| 3264670 | 601.7.1.35 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › UFL1_C | 0.54 | 35.0 | 3.44e-01 | 84.5% | 60.5% |
| 3642758 | 109.4.1.1277 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2, TPR_24 | 0.53 | 40.0 | 3.50e-01 | 80.6% | 70.6% |
| 4299433 | 7014.1.1.1 ↗ | alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › BacA | 0.52 | 36.0 | 3.43e-01 | 100.0% | 59.2% |
| 3297570 | 109.4.1.1308 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_3, TPR_24 | 0.51 | 37.0 | 2.87e-01 | 75.7% | 49.8% |
| 3581368 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.51 | 32.0 | 2.92e-01 | 91.3% | 42.7% |
D4
medium
residues 378-391_426-475