nucleoprotein

Euk-Vir

Farallon_virus

nucleoprotein__YP_010229103__Farallon_virus__248053

Identity

79.8 mean pLDDT

Orthornavirae› Negarnaviricota› Bunyaviricetes› Hareavirales› Nairoviridae› Orthonairovirus› Farallon_virus

TaxID: 248053

View cluster (24 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 199-302

PDB

Domain cluster: rep: nucleoprotein__YP_009553334__Tunis_virus__1810944__D200-304

D2 medium residues 44-103

PDB

Domain cluster: representative

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2v6eA01	1.10.287.3180	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.79	55.0	5.10e-01	73.3%	77.3%
2yb5F01	1.20.1280.250	Mainly Alpha › Up-down Bundle › Monooxygenase ›	0.76	53.0	4.67e-01	73.3%	61.6%
3fbzA01	1.20.58.800	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.68	46.0	3.91e-01	70.0%	47.1%
4nv0A02	1.10.150.340	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Pyrimidine 5'-nucleotidase (UMPH-1), N-terminal domain	0.68	49.0	4.43e-01	76.7%	58.5%
2yqyA00	1.20.120.450	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain	0.52	40.0	3.29e-01	88.3%	81.7%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5024833	140.1.1.14 ↗	alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › tRNA-synt_1e	0.74	51.0	3.87e-01	73.3%	31.7%
3917245	632.6.1.6 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit › Med15_M	0.63	44.0	4.22e-01	73.3%	71.4%
4061582	632.7.1.32 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › Med15_M	0.63	43.0	4.08e-01	73.3%	68.0%

D3 medium residues 104-157

PDB

Domain cluster: rep: nucleoprotein__YP_009551659__Great_Saltee_virus__1810946__D96-157

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02477.21 best	Nairo_nucleo	32.1	8.00e-08	96.3%	10.4%

D4 medium residues 158-196_421-494

PDB

Domain cluster: rep: nucleocapside__YP_009111286__Leopards_Hill_virus__1381104__D44-75_156-179_418-493

D5 medium residues 315-420

PDB

Domain cluster: rep: nucleocapsid_protein,_partial__YP_009666114__Chim_orthonairovirus__2170062__D314-412

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02477.21 best	Nairo_nucleo	100.8	1.20e-28	100.0%	23.2%