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nucleoprotein

Euk-Vir

Clo_Mor_virus

nucleoprotein__YP_010229112__Clo_Mor_virus__1810952

Identity

Accession:
YP_010229112 ↗
Protein ID:
nucleoprotein
Kingdom:
euk

Quality

81.5 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Bunyaviricetes› Hareavirales› Nairoviridae› Orthonairovirus› Clo_Mor_virus

TaxID: 1810952

Cluster

View cluster (24 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 190-287
PDB
Domain cluster: rep: nucleoprotein__YP_009553334__Tunis_virus__1810944__D200-304
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02477.21 best Nairo_nucleo 29.4 5.50e-07 99.0% 17.8%
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3u3iA02 1.20.58.1110 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.88 82.0 7.90e-01 100.0% 88.9%
3eslA01 1.20.58.2070 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.74 46.0 5.17e-01 85.7% 81.3%
1yxrA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.68 46.0 5.22e-01 85.7% 91.9%
2i2xB01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.67 50.0 5.05e-01 94.9% 78.0%
1nafA02 1.20.58.160 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 51.0 5.40e-01 85.7% 92.9%
4it4A02 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.65 47.0 4.84e-01 87.8% 80.2%
2uubT00 1.20.58.110 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Ribosomal protein S20 0.64 44.0 4.41e-01 87.8% 68.7%
4aifA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.64 44.0 3.88e-01 87.8% 48.6%
2idgA00 1.10.3480.10 Mainly Alpha › Orthogonal Bundle › TorD-like › TorD-like 0.63 46.0 3.89e-01 100.0% 46.5%
1urvA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.62 52.0 4.50e-01 91.8% 81.2%
4c0eA01 1.25.40.790 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.62 56.0 4.03e-01 100.0% 40.3%
1j1jA02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.62 43.0 4.59e-01 85.7% 83.5%
7csoA01 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.62 57.0 4.33e-01 100.0% 63.2%
4dlqA02 1.25.40.610 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.61 49.0 4.99e-01 96.9% 91.6%
1cxzB00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.60 42.0 4.47e-01 72.4% 100.0%
3pe0A02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 48.0 4.75e-01 85.7% 85.8%
3lbxB01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 48.0 4.70e-01 85.7% 85.0%
1cunA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 48.0 4.78e-01 85.7% 91.2%
1t72A02 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.60 48.0 4.89e-01 85.7% 87.8%
4gyvE00 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.60 54.0 4.18e-01 100.0% 68.4%
1dn1B00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 53.0 4.12e-01 100.0% 73.9%
3w5mA05 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.59 52.0 3.66e-01 100.0% 34.4%
3nbxX03 1.20.58.1510 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 45.0 4.54e-01 82.7% 84.2%
4kb2A01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.58 46.0 4.46e-01 84.7% 88.1%
5wp3B00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.58 46.0 4.55e-01 84.7% 87.3%
1quuA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 45.0 4.20e-01 84.7% 74.6%
4jgwA01 1.20.870.10 Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 0.58 51.0 4.39e-01 99.0% 67.9%
2qvaA01 1.20.58.190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 1 0.57 43.0 3.94e-01 84.7% 60.5%
3ab3D00 1.10.167.10 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 0.57 50.0 4.23e-01 98.0% 91.5%
3qsgA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.57 46.0 4.41e-01 87.8% 86.1%
2f8xK00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.56 38.0 2.96e-01 100.0% 30.7%
4oydB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.56 44.0 4.20e-01 84.7% 87.2%
1dd5A01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.56 44.0 4.26e-01 84.7% 88.1%
5jrcA00 1.20.58.2140 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 48.0 4.00e-01 100.0% 78.5%
4dllB02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.55 44.0 4.03e-01 86.7% 90.0%
1br0A00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 43.0 4.10e-01 85.7% 84.2%
2yfaA02 1.20.1440.210 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.55 50.0 4.70e-01 98.0% 92.2%
5cecB00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.54 39.0 3.17e-01 100.0% 37.8%
3h36A00 1.10.10.400 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain 0.54 38.0 4.15e-01 76.5% 89.7%
1vpdA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.54 43.0 3.94e-01 86.7% 93.1%
3rc3A05 1.20.58.1080 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 44.0 4.21e-01 89.8% 82.3%
4uucA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.54 38.0 2.99e-01 100.0% 33.0%
2i0mA02 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.54 42.0 4.22e-01 85.7% 83.2%
4hzuS00 1.10.1760.20 Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › 0.53 48.0 4.07e-01 100.0% 82.9%
3uxgA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.53 37.0 3.22e-01 100.0% 44.8%
2rldA00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.52 47.0 4.50e-01 99.0% 89.5%
3caxA01 1.20.120.520 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › nmb1532 protein domain like 0.52 44.0 3.39e-01 90.8% 41.9%
4dwlA00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.52 45.0 4.42e-01 98.0% 93.5%
5aarA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.51 36.0 3.03e-01 100.0% 40.0%
1yo7A00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.51 46.0 4.32e-01 100.0% 98.3%
3deoA02 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.50 42.0 3.76e-01 98.0% 63.7%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1723600 3574.1.1.1 ↗ alpha complex topology › Nucleocapsid protein › Nucleocapsid protein › Nucleocapsid protein › Nairo_nucleo 0.90 84.0 5.18e-01 100.0% 20.3%
3918784 3289.1.1.11 ↗ alpha complex topology › Nck-associated protein 1/Cytoplasmic FMR1-interacting protein 1 › Nck-associated protein 1/Cytoplasmic FMR1-interacting protein 1 › Nck-associated protein 1/Cytoplasmic FMR1-interacting protein 1 › WASH-7_mid, WASH-4_N, WASH-7_C 0.69 63.0 3.53e-01 100.0% 14.5%
3902140 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.68 51.0 5.24e-01 85.7% 80.0%
3666438 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.68 45.0 3.64e-01 85.7% 37.1%
4030521 604.12.1.2 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Vta1 0.64 42.0 4.65e-01 87.8% 85.3%
3697586 603.1.1.5 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin-6_N 0.63 51.0 4.20e-01 85.7% 58.2%
3681637 603.1.1.5 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin-6_N 0.62 50.0 4.10e-01 85.7% 53.7%
3603231 604.18.1.0 ↗ alpha bundles › Spectrin repeat-like › Triple-helical domain in regulatory ATPase variant A (RavA) › Triple-helical domain in regulatory ATPase variant A (RavA) 0.62 48.0 5.07e-01 85.7% 90.0%
3939162 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.62 51.0 4.72e-01 86.7% 72.5%
3900969 604.1.1.1 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.61 49.0 4.66e-01 85.7% 81.7%
3208722 604.6.1.1 ↗ alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › GAT 0.61 51.0 4.95e-01 89.8% 91.8%
3924660 604.1.1.140 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › PF27005 0.61 45.0 4.79e-01 84.7% 90.6%
3934928 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.61 48.0 4.95e-01 84.7% 90.5%
3559937 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.61 49.0 4.81e-01 85.7% 89.5%
3918790 626.1.1.1 ↗ alpha complex topology › Formin homology 2 domain (FH2 domain) › Formin homology 2 domain (FH2 domain) › Formin homology 2 domain (FH2 domain) › FH2 0.61 50.0 3.64e-01 91.8% 64.2%
3535922 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.60 48.0 4.13e-01 85.7% 60.6%
3790837 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.60 48.0 4.28e-01 84.7% 66.7%
3932692 604.6.1.0 ↗ alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.60 48.0 4.99e-01 84.7% 91.1%
3387232 604.6.1.0 ↗ alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.60 46.0 4.66e-01 82.7% 95.0%
4370027 109.4.1.179 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Nro1 0.60 54.0 3.59e-01 100.0% 33.3%
3570651 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.60 48.0 4.89e-01 85.7% 92.6%
3543876 604.1.1.1 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.59 47.0 4.59e-01 85.7% 85.5%
5040635 601.1.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.59 44.0 4.22e-01 88.8% 67.0%
3285767 310.2.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.59 47.0 4.55e-01 83.7% 88.1%
4998153 3352.1.1.0 ↗ alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain 0.59 52.0 3.44e-01 100.0% 31.6%
3801248 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.59 47.0 3.80e-01 84.7% 51.7%
4474203 3684.1.1.0 ↗ alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like 0.58 49.0 4.10e-01 94.9% 87.8%
3935918 109.4.1.645 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › BLM10_mid 0.57 51.0 3.94e-01 100.0% 50.7%
4542751 174.1.1.0 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.57 52.0 4.39e-01 98.0% 77.5%
3595902 310.2.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.57 44.0 3.50e-01 82.7% 85.0%
3218643 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.57 46.0 4.57e-01 87.8% 89.5%
4161991 604.12.1.4 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › ATG1-like_MIT1 0.56 45.0 3.89e-01 85.7% 71.0%
3211044 633.10.1.0 ↗ alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like 0.56 51.0 4.80e-01 100.0% 88.3%
3590458 3352.1.1.8 ↗ alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › PTPS_related 0.55 47.0 3.23e-01 100.0% 33.6%
3722881 633.21.1.0 ↗ alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 0.55 50.0 4.29e-01 98.0% 94.7%
4950248 601.1.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.55 45.0 4.61e-01 92.9% 93.7%
3784732 611.3.1.1 ↗ alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Med26 0.55 48.0 4.63e-01 100.0% 85.2%
3637560 109.4.1.146 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Cohesin_load 0.55 49.0 3.97e-01 100.0% 66.3%
3849754 109.3.1.163 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_4, Ank_5 0.55 38.0 2.83e-01 72.4% 35.0%
3266654 109.3.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.54 48.0 3.15e-01 100.0% 28.4%
3773479 633.21.1.23 ↗ alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › CD20 0.53 47.0 4.31e-01 98.0% 95.4%
4389121 109.3.1.164 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_3, Ank_4 0.53 37.0 3.17e-01 100.0% 41.7%
3940792 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.52 41.0 3.97e-01 84.7% 87.3%
4863092 150.3.1.28 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › 4-helical cytokines › 4-helical cytokine › GCSF 0.52 47.0 4.49e-01 98.0% 91.2%
3743652 109.4.1.451 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Iml2-TPR_39 0.51 46.0 3.40e-01 99.0% 79.6%
3753634 109.3.1.166 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_3 0.51 37.0 3.01e-01 90.8% 37.5%
3936623 633.10.1.0 ↗ alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like 0.51 46.0 4.21e-01 99.0% 95.2%
3465076 109.3.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.51 37.0 2.83e-01 94.9% 30.8%
D2 medium residues 1-77_374-435
PDB
Domain cluster: representative
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF02477.21 best Nairo_nucleo 53.4 2.80e-14 57.6% 18.1%
PF02477.21 Nairo_nucleo 70.3 2.20e-19 44.6% 13.8%
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vb5A01 1.20.120.420 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 0.59 29.0 3.42e-01 79.1% 66.0%
4epzA00 1.25.40.810 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › UpxZ 0.58 30.0 2.89e-01 85.6% 42.2%
2etsA00 1.20.120.440 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YppE-like 0.55 35.0 3.83e-01 82.7% 76.5%
1vw4T01 6.10.330.20 Special › Helix non-globular › Monooxygenase › 0.53 35.0 3.86e-01 99.3% 83.0%
2c12A01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.51 32.0 3.31e-01 78.4% 65.4%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1723600 3574.1.1.1 ↗ alpha complex topology › Nucleocapsid protein › Nucleocapsid protein › Nucleocapsid protein › Nairo_nucleo 0.95 92.0 6.03e-01 100.0% 90.6%
4890819 3574.1.1.1 ↗ alpha complex topology › Nucleocapsid protein › Nucleocapsid protein › Nucleocapsid protein › Nairo_nucleo 0.93 89.0 5.90e-01 99.3% 92.1%
1681656 3574.1.1.1 ↗ alpha complex topology › Nucleocapsid protein › Nucleocapsid protein › Nucleocapsid protein › Nairo_nucleo 0.56 51.0 4.63e-01 95.0% 95.5%
3266867 109.4.1.273 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PI4KB-PIK1_PIK 0.54 25.0 2.73e-01 71.2% 49.6%
D3 medium residues 78-151_299-373
PDB
Domain cluster: rep: nucleoprotein__NP_950237__Crimean-Congo_hemorrhagic_fever_orthonairovirus__1980519__D84-138_302-383
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF02477.21 best Nairo_nucleo 113.3 1.90e-32 54.4% 16.9%
PF02477.21 Nairo_nucleo 53.9 2.00e-14 51.0% 16.5%
D4 medium residues 152-182_436-479
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02477.21 best Nairo_nucleo 25.0 1.20e-05 81.3% 10.4%
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2pc1A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.54 41.0 3.20e-01 84.0% 91.9%
4mk3A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.53 40.0 3.56e-01 82.7% 100.0%
2oh1C00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 38.0 2.97e-01 81.3% 83.7%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4315852 1.1.5.44 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › SecDF_P1_head 0.56 46.0 3.48e-01 93.3% 37.9%
163433 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.52 40.0 3.05e-01 82.7% 86.9%