nucleoprotein

Euk-Vir

Almendravirus_cootbay

nucleoprotein__YP_010229208__Almendravirus_cootbay__1972685

Identity

73.0 mean pLDDT

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Rhabdoviridae› Almendravirus› Almendravirus_cootbay

TaxID: 1972685

View cluster (144 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 41-227

PDB

Domain cluster: rep: nucleoprotein__YP_010084457__Lepeophtheirus_salmonis_rhabdovirus_127__1573761__D41-226

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00945.24 best	Rhabdo_ncap	29.1	6.90e-07	62.6%	20.2%

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2gttC01	1.10.3570.10	Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like fold › Rhabdovirus nucleocapsid protein like domain	0.86	82.0	8.10e-01	99.5%	100.0%
3hhwK01	1.10.3570.10	Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like fold › Rhabdovirus nucleocapsid protein like domain	0.83	77.0	7.87e-01	98.9%	100.0%
3lxzB02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.53	32.0	3.65e-01	85.6%	79.7%
2o7gA00	1.10.1740.10	Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif	0.53	25.0	3.43e-01	97.3%	90.9%
1h99A01	1.10.1790.10	Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › PRD domain	0.52	26.0	3.34e-01	75.4%	81.7%
3ii9B01	1.10.540.10	Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain	0.51	28.0	3.31e-01	97.9%	75.4%
4xvxA03	1.20.140.10	Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3	0.50	33.0	3.70e-01	86.1%	84.4%

ECOD (6)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4846751	566.2.1.1 ↗	alpha complex topology › P40 nucleoprotein-like › Rhabdovirus nucleocapsid protein › Rhabdovirus nucleocapsid protein › Rhabdo_ncap	0.86	83.0	7.10e-01	100.0%	70.7%
2992377	566.2.1.1 ↗	alpha complex topology › P40 nucleoprotein-like › Rhabdovirus nucleocapsid protein › Rhabdovirus nucleocapsid protein › Rhabdo_ncap	0.86	83.0	6.40e-01	100.0%	52.8%
2966640	566.2.1.1 ↗	alpha complex topology › P40 nucleoprotein-like › Rhabdovirus nucleocapsid protein › Rhabdovirus nucleocapsid protein › Rhabdo_ncap	0.85	80.0	6.06e-01	100.0%	46.3%
3538325	109.4.1.892 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_ARMC5	0.54	36.0	2.88e-01	96.3%	34.4%
3815745	592.6.1.1 ↗	alpha arrays › PWI domain-like › Pre-mRNA-splicing helicase BRR2 plug domain › Pre-mRNA-splicing helicase BRR2 plug domain › BRR2_plug	0.54	24.0	3.60e-01	85.0%	97.5%
3267667	109.24.1.1 ↗	alpha superhelices › Repetitive alpha hairpins › Helical domain in dedicator of cytokinesis protein 9 › Helical domain in dedicator of cytokinesis protein 9 › DHR-2_Lobe_A	0.51	38.0	3.98e-01	94.1%	87.3%

D2 medium residues 274-348_379-429

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00945.24 best	Rhabdo_ncap	42.2	7.40e-11	92.9%	18.1%

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2gicD02	1.10.3610.10	Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like › Nucleoprotein	0.88	84.0	7.07e-01	100.0%	77.9%
2gttJ02	1.10.3610.10	Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like › Nucleoprotein	0.83	78.0	6.69e-01	100.0%	77.4%
2dg8D00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.53	44.0	3.95e-01	88.1%	89.0%
5figA00	1.20.1270.360	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 ›	0.51	31.0	3.48e-01	77.0%	76.0%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3718133	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.59	52.0	4.20e-01	100.0%	84.7%