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nucleoprotein

Euk-Vir

Almendravirus_balsa

nucleoprotein__YP_010229214__Almendravirus_balsa__1972684

Identity

Accession:: YP_010229214 ↗
Protein ID:: nucleoprotein
Kingdom:: euk

Quality

77.9 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Rhabdoviridae› Almendravirus› Almendravirus_balsa

TaxID: 1972684

Cluster

View cluster (34 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 235-428

PDB

Domain cluster: rep: nucleoprotein__YP_009094365__Almpiwar_virus__318843__D225-426

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00945.24 best	Rhabdo_ncap	65.3	7.30e-18	91.8%	35.1%

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2gicD02	1.10.3610.10	Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like › Nucleoprotein	0.82	77.0	7.76e-01	100.0%	97.9%
2gttJ02	1.10.3610.10	Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like › Nucleoprotein	0.80	74.0	7.54e-01	100.0%	97.9%
3kyiA00	1.20.120.160	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain	0.54	26.0	3.15e-01	78.9%	66.4%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2992377	566.2.1.1 ↗	alpha complex topology › P40 nucleoprotein-like › Rhabdovirus nucleocapsid protein › Rhabdovirus nucleocapsid protein › Rhabdo_ncap	0.87	55.0	4.26e-01	71.6%	33.1%
2966640	566.2.1.1 ↗	alpha complex topology › P40 nucleoprotein-like › Rhabdovirus nucleocapsid protein › Rhabdovirus nucleocapsid protein › Rhabdo_ncap	0.84	76.0	5.77e-01	100.0%	45.0%
1763953	566.1.1.3 ↗	alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related › Pneumo_ncap	0.64	39.0	3.17e-01	73.2%	31.2%

D2 medium residues 37-133

PDB

Domain cluster: representative

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2gttC01	1.10.3570.10	Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like fold › Rhabdovirus nucleocapsid protein like domain	0.75	66.0	5.17e-01	96.9%	47.4%
2ii2A03	1.10.220.10	Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin	0.50	30.0	3.03e-01	94.8%	58.2%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2992377	566.2.1.1 ↗	alpha complex topology › P40 nucleoprotein-like › Rhabdovirus nucleocapsid protein › Rhabdovirus nucleocapsid protein › Rhabdo_ncap	0.76	68.0	4.53e-01	100.0%	25.7%
2966640	566.2.1.1 ↗	alpha complex topology › P40 nucleoprotein-like › Rhabdovirus nucleocapsid protein › Rhabdovirus nucleocapsid protein › Rhabdo_ncap	0.75	69.0	4.48e-01	100.0%	24.5%

D3 medium residues 134-229

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00945.24 best	Rhabdo_ncap	45.7	6.20e-12	96.9%	21.0%

CATH (14)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2gttC01	1.10.3570.10	Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like fold › Rhabdovirus nucleocapsid protein like domain	0.87	81.0	6.26e-01	99.0%	54.1%
3hhwK01	1.10.3570.10	Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like fold › Rhabdovirus nucleocapsid protein like domain	0.80	73.0	5.77e-01	99.0%	51.4%
3k53A02	1.10.287.1770	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.59	31.0	3.17e-01	75.0%	49.0%
1a41A02	1.20.120.380	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2	0.57	39.0	3.98e-01	71.9%	87.2%
3hiuD00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.55	46.0	4.06e-01	96.9%	80.3%
7p7cC02	1.10.645.10	Mainly Alpha › Orthogonal Bundle › Cytochrome-c3 Hydrogenase; chain B › Cytochrome-c3 Hydrogenase, chain B	0.54	42.0	3.00e-01	88.5%	64.2%
6khjH01	1.10.645.10	Mainly Alpha › Orthogonal Bundle › Cytochrome-c3 Hydrogenase; chain B › Cytochrome-c3 Hydrogenase, chain B	0.54	43.0	2.97e-01	88.5%	61.6%
3h1nA02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.54	34.0	3.25e-01	96.9%	51.7%
7jplA01	1.10.287.70	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.52	37.0	3.48e-01	74.0%	89.7%
2bnlC00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.52	38.0	3.46e-01	79.2%	85.8%
3ddeB00	1.20.910.10	Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like	0.51	43.0	3.37e-01	96.9%	61.0%
2hoqA02	1.10.150.520	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 ›	0.51	36.0	3.91e-01	72.9%	89.9%
4ezbA02	1.10.1040.10	Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2	0.51	41.0	3.86e-01	95.8%	72.6%
2pbiA02	1.10.1240.60	Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 ›	0.51	39.0	3.93e-01	85.4%	87.1%

ECOD (15)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3228563	174.1.1.0 ↗	few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain	0.63	45.0	4.06e-01	75.0%	92.6%
5028468	601.1.2.0 ↗	alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608)	0.61	44.0	3.51e-01	75.0%	50.3%
3433019	101.1.1.65 ↗	alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_4	0.60	43.0	3.95e-01	75.0%	99.2%
4381449	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.59	41.0	4.56e-01	71.9%	100.0%
3587004	195.1.1.1 ↗	alpha complex topology › NusB-like › NusB-like › NusB-like › NusB	0.58	43.0	3.80e-01	79.2%	84.6%
3169602	387.1.6.2 ↗	few secondary structure elements › omega toxin-like › omega toxin-related › Conotoxin Mo3964 › Sin3a_C	0.58	47.0	3.39e-01	87.5%	75.6%
3387918	207.9.1.3 ↗	beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide_3	0.57	38.0	2.67e-01	97.9%	20.3%
3625738	5050.1.1.1 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr	0.56	46.0	3.66e-01	91.7%	90.0%
3331960	6155.1.1.1 ↗	alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MtN3_slv	0.56	39.0	3.37e-01	71.9%	67.1%
4994749	150.1.1.0 ↗	alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin	0.56	39.0	3.82e-01	99.0%	65.5%
3744370	174.1.1.0 ↗	few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain	0.55	40.0	3.58e-01	76.0%	87.1%
3233878	633.23.1.0 ↗	alpha bundles › Bromodomain-like › Claudin › Claudin	0.55	39.0	3.66e-01	76.0%	93.6%
3590136	162.1.1.1 ↗	alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PRD	0.54	38.0	3.69e-01	74.0%	76.4%
3466334	174.1.1.0 ↗	few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain	0.52	38.0	3.47e-01	77.1%	86.2%
4374650	601.54.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › low CO2-inducible protein LCI1 › low CO2-inducible protein LCI1	0.51	38.0	3.35e-01	81.2%	72.9%