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odv-e56
Euk-VirOryctes_rhinoceros_nudivirus
odv-e56__YP_002321426__Oryctes_rhinoceros_nudivirus__92521
Identity
- Accession:
- YP_002321426 ↗
- Protein ID:
- odv-e56
- Kingdom:
- euk
Quality
83.0
mean pLDDT
Taxonomy
TaxID: 92521
Cluster
View cluster (13 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 17-110
Domain cluster:
rep: orf62_gene_product__YP_004956810__Helicoverpa_zea_nudivirus_2__1128424__D3-95
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4mk6A00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.54 | 46.0 | 3.67e-01 | 92.6% | 62.8% |
| 5ziyA01 | 1.20.1330.10 | Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain | 0.54 | 48.0 | 3.82e-01 | 100.0% | 68.6% |
| 2l48A00 | 3.30.70.2030 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 30.0 | 3.12e-01 | 91.5% | 58.8% |
| 3nftA00 | 1.20.1710.10 | Mainly Alpha › Up-down Bundle › IpaD-like › IpaD-like | 0.51 | 44.0 | 3.27e-01 | 98.9% | 95.0% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3743981 | 5081.1.1.2 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › DER1 | 0.58 | 43.0 | 3.50e-01 | 80.9% | 84.7% |
| 4955500 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.54 | 42.0 | 2.49e-01 | 83.0% | 14.3% |
| 2409293 | 601.51.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-helical domain in phase 1 flagellin › alpha-helical domain in phase 1 flagellin › Flagellin_N | 0.54 | 48.0 | 3.82e-01 | 100.0% | 68.2% |
| 4023956 | 3871.1.1.1 ↗ | alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN | 0.53 | 44.0 | 3.97e-01 | 92.6% | 97.7% |
| 4996993 | 7014.1.1.2 ↗ | alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › TauE | 0.52 | 46.0 | 3.56e-01 | 100.0% | 80.0% |
| 3490387 | 101.1.10.12 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Spy1 | 0.52 | 40.0 | 3.50e-01 | 83.0% | 59.4% |
| 5073553 | 7014.1.1.2 ↗ | alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › TauE | 0.52 | 46.0 | 3.60e-01 | 100.0% | 86.7% |
| 4045124 | 7014.1.1.2 ↗ | alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › TauE | 0.51 | 45.0 | 3.29e-01 | 100.0% | 81.7% |
| 5077285 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.50 | 42.0 | 2.79e-01 | 93.6% | 41.5% |
| 3767831 | 101.1.10.12 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Spy1 | 0.50 | 39.0 | 3.52e-01 | 86.2% | 60.0% |
D2
high
residues 114-225_329-353
Domain cluster:
rep: PIF-5c__YP_009116749__Tipula_oleracea_nudivirus__1546257__D136-243_355-375
D3
high
residues 234-306
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4ijrA00 | 3.20.20.100 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain | 0.62 | 45.0 | 2.96e-01 | 78.1% | 32.3% |
| 4bopB00 | 3.90.70.80 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.55 | 34.0 | 2.79e-01 | 74.0% | 30.0% |
| 3bhqA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.51 | 36.0 | 2.70e-01 | 75.3% | 80.2% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3272149 | 103.1.1.14 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_4 | 0.65 | 30.0 | 3.63e-01 | 74.0% | 66.7% |
| 3658332 | 103.1.1.14 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_4 | 0.50 | 30.0 | 3.37e-01 | 72.6% | 84.0% |