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odv-e66

Euk-Vir

Agrotis_segetum_granulovirus

odv-e66__YP_009513067__Agrotis_segetum_granulovirus__10464

Identity

Accession:
YP_009513067 ↗
Protein ID:
odv-e66
Kingdom:
euk

Quality

83.6 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D2 medium residues 190-239
PDB
Domain cluster: representative
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4l3uA00 1.20.1480.40 Mainly Alpha › Up-down Bundle › hypothetical protein mp506/mpn330, domain 1 › Uncharacterised protein PF16133, DUF4844 0.70 51.0 3.86e-01 88.0% 31.7%
4jvyB00 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.65 54.0 3.68e-01 100.0% 25.3%
4toiA02 1.10.287.610 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.63 49.0 4.99e-01 88.0% 87.5%
1skvA00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.63 50.0 4.69e-01 92.0% 70.3%
1ydxA02 1.10.287.1120 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein 0.63 50.0 4.19e-01 90.0% 76.7%
1hr5A00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.63 50.0 5.07e-01 88.0% 95.8%
4ghjB00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.62 45.0 4.03e-01 80.0% 59.2%
3ttvA02 1.20.1370.20 Mainly Alpha › Up-down Bundle › Hemocyanin, N-terminal domain › Catalase, four-helical domain 0.61 45.0 3.73e-01 86.0% 44.2%
3hl1A02 6.10.140.1530 Special › Helix non-globular › Helix Hairpins › 0.60 48.0 4.47e-01 90.0% 75.4%
2kjgA00 1.20.120.970 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.60 45.0 3.76e-01 86.0% 46.5%
1xqiA00 3.30.70.141 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleoside diphosphate kinase-like domain 0.60 46.0 3.17e-01 86.0% 23.6%
6oi7A01 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.59 45.0 3.02e-01 84.0% 21.9%
2n6yA00 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.58 42.0 3.66e-01 78.0% 93.8%
2ymmA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.58 48.0 4.24e-01 94.0% 90.4%
1vf7A03 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.57 45.0 4.31e-01 90.0% 81.7%
2d9dA00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.57 46.0 4.00e-01 100.0% 71.9%
4mk3A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.56 44.0 3.53e-01 94.0% 45.2%
1x4tA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.55 43.0 4.15e-01 90.0% 86.2%
4asvA00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.54 41.0 3.65e-01 86.0% 60.8%
2og9A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.53 42.0 3.28e-01 96.0% 78.5%
4od8D00 6.10.140.1880 Special › Helix non-globular › Helix Hairpins › 0.53 39.0 3.90e-01 82.0% 88.2%
2o4cA03 3.30.1370.170 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Erythronate-4-phosphate dehydrogenase, dimerisation domain 0.52 38.0 3.34e-01 86.0% 70.5%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3631533 2003.1.5.73 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 0.69 59.0 3.55e-01 96.0% 15.6%
4677287 2007.6.1.1 a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › Ribosomal_S2 0.69 59.0 3.77e-01 98.0% 72.0%
4029666 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.68 57.0 3.37e-01 100.0% 15.7%
3592841 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.65 50.0 4.52e-01 88.0% 61.4%
4575461 101.21.1.1 alpha arrays › HTH › HTH domain in DNA topoisomerase IV alpha subunit › HTH domain in DNA topoisomerase IV alpha subunit › TP6A_N 0.65 50.0 4.21e-01 90.0% 48.9%
4497102 10.12.1.8 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AraC_binding 0.61 49.0 3.35e-01 90.0% 26.1%
3705393 3636.1.1.1 a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain › HBB 0.59 46.0 3.99e-01 98.0% 90.5%
4463998 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.58 47.0 2.87e-01 92.0% 15.3%
4049864 6130.1.1.1 alpha complex topology › Selenocysteine synthase N-terminal domain › Selenocysteine synthase N-terminal domain › Selenocysteine synthase N-terminal domain › Se-cys_synth_N 0.57 42.0 3.73e-01 80.0% 58.7%
3786100 3184.1.1.1 alpha bundles › mRNA 3'-end-processing protein Rna15p hinge domain › mRNA 3'-end-processing protein Rna15p hinge domain › mRNA 3'-end-processing protein Rna15p hinge domain › CSTF2_hinge 0.56 44.0 3.90e-01 98.0% 67.1%
3302084 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 44.0 3.79e-01 98.0% 89.5%
3849724 5.1.11.11 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › WD40 0.55 43.0 2.54e-01 94.0% 21.7%
5018187 192.4.1.0 alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) 0.53 42.0 4.02e-01 100.0% 92.3%
D3 medium residues 240-315
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04850.20 best Baculo_E66 78.2 7.90e-22 98.7% 15.4%
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3vsmA01 1.50.10.100 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Chondroitin AC/alginate lyase 0.89 83.0 5.18e-01 100.0% 21.6%
2wcoA01 1.50.10.100 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Chondroitin AC/alginate lyase 0.78 70.0 4.44e-01 100.0% 26.7%
1eguA02 1.50.10.100 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Chondroitin AC/alginate lyase 0.78 69.0 4.41e-01 100.0% 24.2%
1rw9A01 1.50.10.100 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Chondroitin AC/alginate lyase 0.77 69.0 4.39e-01 100.0% 24.4%
1j0mA01 1.50.10.100 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Chondroitin AC/alginate lyase 0.77 68.0 4.37e-01 100.0% 24.9%
2pn5A09 1.50.10.20 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.66 55.0 3.81e-01 97.4% 28.5%
1kaeA03 1.20.5.1300 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.61 34.0 3.84e-01 72.4% 72.7%
3dssB00 1.50.10.20 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.58 48.0 3.21e-01 96.1% 21.7%
2ibpA02 1.10.230.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450-Terp; domain 2 › Cytochrome P450-Terp, domain 2 0.56 44.0 4.04e-01 88.2% 87.7%
2e5vA03 1.20.58.100 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain 0.53 36.0 3.38e-01 84.2% 54.6%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1005529 109.2.1.27 alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Lyase_8_N 0.89 83.0 5.37e-01 100.0% 25.9%
3397525 109.2.1.24 alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › TED_complement 0.65 55.0 3.67e-01 97.4% 29.1%
3993275 109.2.1.1 alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Prenyltrans 0.56 46.0 3.09e-01 96.1% 21.7%
D4 medium residues 316-384_415-479
PDB
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF04850.20 best Baculo_E66 81.7 7.10e-23 52.2% 15.0%
PF04850.20 Baculo_E66 83.1 2.60e-23 50.0% 13.6%
D5 medium residues 385-414_480-553
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04850.20 best Baculo_E66 29.3 5.80e-07 97.1% 19.1%
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3vsmA02 2.70.98.100 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Baculovirus E66 occlusion-derived virus envelope protein, domain 2 0.91 87.0 6.83e-01 100.0% 89.1%
2yvsA02 3.30.70.2560 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 24.0 3.12e-01 85.6% 62.7%
2hiyA02 3.30.70.1260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › bacterial protein sp0830 like 0.53 28.0 2.99e-01 84.6% 54.3%
5iqaA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 33.0 3.52e-01 93.3% 71.1%
2acxA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 35.0 3.71e-01 94.2% 78.0%
1vx7X00 3.30.1360.210 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.52 29.0 3.07e-01 84.6% 57.7%
2weiA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 34.0 3.60e-01 91.3% 77.8%
2wtkC01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 34.0 3.65e-01 94.2% 80.9%
1s9iB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.50 33.0 3.47e-01 93.3% 75.3%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1005530 12.3.1.11 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Baculo_E66 0.91 87.0 6.31e-01 100.0% 69.2%
3635926 304.7.1.0 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors 0.56 25.0 3.02e-01 86.5% 61.5%
3622118 864.1.1.3 a+b two layers › DLC › DLC › DLC › Ground-like 0.53 29.0 3.41e-01 92.3% 76.8%
3618395 864.1.1.3 a+b two layers › DLC › DLC › DLC › Ground-like 0.52 28.0 3.21e-01 92.3% 71.6%
3804991 1.1.7.94 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF28794 0.52 31.0 3.38e-01 95.2% 70.6%
5047332 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.50 26.0 2.91e-01 87.5% 61.3%
5042920 223.5.1.0 a+b three layers › Profilin-like › YNR034W-A-like › YNR034W-A-like 0.50 26.0 3.39e-01 83.7% 89.8%
D6 medium residues 554-678
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04850.20 best Baculo_E66 73.6 2.00e-20 89.6% 27.0%
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3vsmA03 2.60.40.4340 Mainly Beta › Sandwich › Immunoglobulin-like › 0.94 68.0 7.93e-01 74.4% 100.0%
1e2tA02 3.30.1120.150 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.66 29.0 3.51e-01 75.2% 62.8%
1o7dD01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.54 40.0 3.22e-01 78.4% 90.4%
2jmbA00 2.40.128.290 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein family Atu4866 0.53 25.0 3.05e-01 76.8% 68.4%
4k35A02 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.52 44.0 3.76e-01 92.0% 97.1%
2f2hA01 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.52 41.0 3.33e-01 84.0% 86.9%
1f49A05 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.52 44.0 3.39e-01 92.0% 87.9%
5e1qB01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.51 43.0 3.32e-01 90.4% 85.5%
1nkgA01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.50 42.0 3.38e-01 91.2% 86.9%
4mxtA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.50 41.0 3.56e-01 86.4% 95.2%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1005531 12.2.1.2 beta sandwiches › Glycosyl hydrolase domain-like › Hyaluronate lyase-like, C-terminal domain › Hyaluronate lyase-like, C-terminal domain › Baculo_E66 0.94 70.0 8.00e-01 76.0% 100.0%
4079675 4959.1.1.1 a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_3 0.59 26.0 2.80e-01 70.4% 43.1%
3744768 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.58 44.0 4.54e-01 82.4% 84.2%
3256679 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.56 31.0 3.82e-01 87.2% 88.0%
4991405 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.56 46.0 3.18e-01 87.2% 45.6%
3473012 12.3.1.13 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_38C 0.55 45.0 3.48e-01 90.4% 97.7%
3210934 77.3.1.7 beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › PF31062 0.54 40.0 4.40e-01 90.4% 91.4%
3716389 77.3.1.0 beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain 0.54 41.0 2.99e-01 94.4% 29.0%
5030147 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.53 36.0 3.50e-01 88.0% 60.0%
3909523 6129.1.1.0 beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family 0.52 33.0 2.73e-01 92.8% 38.5%
3734525 331.3.1.2 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Ring_hydroxyl_A 0.52 41.0 3.36e-01 82.4% 72.6%
4113536 6129.1.1.1 beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.51 33.0 3.12e-01 82.4% 51.2%
3273142 77.1.1.0 beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein 0.51 39.0 2.90e-01 97.6% 31.6%
5006751 71.1.1.8 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_like 0.51 41.0 3.56e-01 85.6% 93.7%
3628751 331.18.1.0 a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc 0.51 43.0 3.82e-01 92.8% 81.1%
1107912 71.1.1.7 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_2 0.50 41.0 3.56e-01 86.4% 95.2%