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odv-e66

Euk-Vir

Cryptophlebia_peltastica_nucleopolyhedrovirus

odv-e66__YP_010086906__Cryptophlebia_peltastica_nucleopolyhedrovirus__2304025

Identity

Accession:
YP_010086906 ↗
Protein ID:
odv-e66
Kingdom:
euk

Quality

87.4 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Cryptophlebia_peltastica_nucleopolyhedrovirus

TaxID: 2304025

Cluster

View cluster (43 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 43-250
PDB
Domain cluster: rep: ODV-e66__YP_002854745__Euproctis_pseudoconspersa_nucleopolyhedrovirus__307467__D22-215
D2 medium residues 251-426
PDB
Domain cluster: rep: ODV-E66__YP_009345851__Mythimna_unipuncta_granulovirus_B__2169746__D245-372
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04850.20 best Baculo_E66 305.7 7.60e-91 100.0% 40.6%
D3 medium residues 427-596
PDB
Domain cluster: rep: Odv-e66__YP_006607780__Apocheima_cinerarium_nucleopolyhedrovirus__307461__D454-545
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04850.20 best Baculo_E66 171.4 4.30e-50 100.0% 39.2%
D4 medium residues 597-663
PDB
Domain cluster: rep: hypothetical_protein_KM620_gp054__YP_010086321__Hyposidra_talaca_nucleopolyhedrovirus__1070315__D714-774
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3vsmA03 2.60.40.4340 Mainly Beta › Sandwich › Immunoglobulin-like › 0.90 82.0 7.24e-01 98.5% 73.4%
4ndhB00 3.30.428.10 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like 0.64 55.0 4.13e-01 100.0% 45.5%
2vrqA01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.61 54.0 4.35e-01 100.0% 72.0%
2lfvA00 3.30.70.1070 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sporulation related repeat 0.60 38.0 3.33e-01 88.1% 40.6%
5e9aB03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.58 47.0 4.83e-01 100.0% 96.8%
7o0eA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.57 50.0 4.70e-01 100.0% 91.6%
2j0wA04 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.57 38.0 3.70e-01 89.6% 61.3%
4oifA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.57 45.0 4.69e-01 100.0% 96.8%
2qmlA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.56 48.0 3.49e-01 98.5% 51.3%
6mv2A01 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 48.0 4.26e-01 100.0% 78.4%
2qrrA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.55 38.0 3.47e-01 74.6% 77.3%
3tviA02 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.54 46.0 3.60e-01 100.0% 85.5%
2q7eA02 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.53 45.0 3.27e-01 100.0% 50.9%
3n5fA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 41.0 3.56e-01 89.6% 63.2%
3axsA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 40.0 2.63e-01 86.6% 35.7%
3dxqA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 39.0 3.70e-01 98.5% 66.3%
3lp8A04 3.90.600.10 Alpha Beta › Alpha-Beta Complex › Glycinamide Ribonucleotide Synthetase; Chain A, domain 4 › Phosphoribosylglycinamide synthetase, C-terminal domain 0.52 40.0 3.69e-01 89.6% 63.4%
4pxdA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 40.0 3.48e-01 89.6% 63.5%
2rjzA02 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.52 43.0 3.90e-01 98.5% 73.7%
1lk5A02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.51 37.0 3.62e-01 88.1% 68.4%
5v7qT00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.51 43.0 3.92e-01 100.0% 81.6%
1vdhA01 3.30.70.1030 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Apc35880; domain 1 0.51 39.0 3.33e-01 86.6% 50.4%
2qf4A01 2.40.10.340 Mainly Beta › Beta Barrel › Thrombin, subunit H › Rod shape-determining protein MreC, domain 1 0.51 40.0 3.91e-01 91.0% 97.5%
1yoxA00 3.60.160.10 Alpha Beta › 4-Layer Sandwich › Double-stranded beta-helix › Mitochondrial biogenesis AIM24 0.51 40.0 3.06e-01 98.5% 32.6%
5huoE01 3.90.1170.20 Alpha Beta › Alpha-Beta Complex › Aldehyde Oxidoreductase; domain 3 › Quinolinate phosphoribosyl transferase, N-terminal domain 0.51 39.0 3.28e-01 91.0% 75.5%
3b34A01 2.60.40.1730 Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain 0.51 42.0 3.22e-01 98.5% 43.9%
4o4bB00 3.30.470.160 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Inositol polyphosphate kinase 0.50 36.0 2.56e-01 79.1% 69.2%
1vbkA01 3.30.70.1510 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › THUMP domain-like 0.50 38.0 3.58e-01 91.0% 67.5%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1005531 12.2.1.2 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Hyaluronate lyase-like, C-terminal domain › Hyaluronate lyase-like, C-terminal domain › Baculo_E66 0.90 82.0 7.18e-01 98.5% 71.9%
5056451 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.69 51.0 4.70e-01 80.6% 80.9%
4205385 12.1.1.6 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro_42C 0.62 51.0 5.05e-01 100.0% 87.1%
3191211 304.8.1.21 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_9 0.61 41.0 3.87e-01 88.1% 55.3%
4666305 11.1.5.54 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › PsaS 0.60 51.0 4.44e-01 100.0% 80.7%
3364258 304.8.1.45 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.59 49.0 4.48e-01 100.0% 70.5%
3382396 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.59 48.0 4.48e-01 100.0% 72.9%
3308135 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.58 48.0 4.41e-01 100.0% 68.9%
3833178 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.58 48.0 4.54e-01 98.5% 76.2%
3738074 3012.1.1.1 ↗ a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › Trehalose_PPase 0.56 45.0 4.07e-01 100.0% 64.4%
2076390 3012.1.1.1 ↗ a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › Trehalose_PPase 0.56 43.0 4.07e-01 98.5% 69.6%
3630950 10.12.1.51 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_2 0.56 46.0 3.13e-01 98.5% 64.1%
5008026 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.55 43.0 3.16e-01 97.0% 32.0%
5054821 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.55 41.0 3.15e-01 97.0% 34.8%
3932127 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.55 44.0 3.88e-01 91.0% 80.0%
4107260 325.1.1.3 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › CO dehydrogenase molybdoprotein N-domain-like › GARS_C 0.55 43.0 3.87e-01 89.6% 66.0%
324385 325.1.1.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › CO dehydrogenase molybdoprotein N-domain-like 0.55 42.0 3.67e-01 89.6% 52.7%
3990905 304.30.1.1 ↗ a+b two layers › Alpha-beta plaits › D-ribose-5-phosphate isomerase (RpiA), lid domain › D-ribose-5-phosphate isomerase (RpiA), lid domain › Rib_5-P_isom_A 0.54 39.0 3.66e-01 88.1% 61.2%
3365716 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.54 45.0 4.21e-01 100.0% 72.9%
3249558 3012.1.1.1 ↗ a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › Trehalose_PPase 0.54 43.0 4.10e-01 100.0% 73.8%
5030186 304.4.1.1 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg 0.53 38.0 3.57e-01 86.6% 61.2%
3826658 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.53 45.0 4.18e-01 100.0% 74.1%
4089050 325.1.1.3 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › CO dehydrogenase molybdoprotein N-domain-like › GARS_C 0.53 40.0 3.08e-01 83.6% 38.1%
3815383 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.53 44.0 4.07e-01 100.0% 72.9%
4575105 882.1.1.0 ↗ a+b two layers › Ribosomal protein L5 › Ribosomal protein L5 › Ribosomal protein L5 0.53 40.0 3.19e-01 91.0% 38.0%
4516880 304.8.1.74 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › PF26539 0.52 34.0 3.32e-01 88.1% 56.2%
4277035 310.3.1.4 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › GspL_C 0.52 41.0 3.91e-01 98.5% 75.0%
3581740 206.1.1.71 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Kdo 0.52 41.0 2.69e-01 88.1% 61.6%
3953180 304.3.1.0 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.52 39.0 3.66e-01 95.5% 64.7%
4931735 206.1.3.2 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › GARS_A 0.52 40.0 2.62e-01 88.1% 18.6%
3973010 4081.1.1.0 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.52 43.0 3.22e-01 98.5% 45.3%
4882245 304.4.1.5 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Dyp_perox_N 0.52 39.0 3.15e-01 85.1% 57.3%
4989606 3794.1.2.0 ↗ a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › a+b domain in pyruvate carboxylase 0.52 43.0 4.17e-01 100.0% 82.5%
4447448 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.51 41.0 2.86e-01 91.0% 67.1%
None — 0.51 40.0 2.66e-01 94.0% 60.3%
1205765 325.1.1.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › CO dehydrogenase molybdoprotein N-domain-like 0.51 39.0 3.47e-01 89.6% 55.7%
4279953 206.1.1.11 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.51 38.0 2.66e-01 83.6% 62.8%
5025626 325.1.1.17 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › CO dehydrogenase molybdoprotein N-domain-like › GARS_A 0.51 39.0 2.91e-01 89.6% 30.0%
3230438 2003.1.9.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins › ThiF 0.51 42.0 2.76e-01 95.5% 58.5%
4340052 2006.1.1.7 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › S6PP 0.51 42.0 2.80e-01 94.0% 98.6%
5017972 327.16.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system 0.50 34.0 3.51e-01 88.1% 78.3%