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orf116

Euk-Vir

Sucra_jujuba_nucleopolyhedrovirus

orf116__YP_009186807__Sucra_jujuba_nucleopolyhedrovirus__1563660

Identity

Accession:
YP_009186807 ↗
Protein ID:
orf116
Kingdom:
euk

Quality

73.6 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Sucra_jujuba_nucleopolyhedrovirus

TaxID: 1563660

Cluster

View cluster (19 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 23-214
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6tblB01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.73 43.0 5.51e-01 82.8% 100.0%
7ldgA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.70 62.0 5.93e-01 94.8% 83.2%
7k0yA01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.69 60.0 4.46e-01 93.2% 37.6%
4atgA00 1.25.40.770 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › TAF6, C-terminal HEAT repeat domain 0.68 59.0 5.93e-01 100.0% 91.8%
2qk2A01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.67 59.0 5.52e-01 100.0% 76.9%
3zilA00 1.25.10.60 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Rad61, Wapl domain 0.65 57.0 4.59e-01 95.8% 49.7%
1uw4B00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.64 58.0 5.32e-01 98.4% 77.4%
4crwA00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.62 56.0 5.34e-01 100.0% 83.2%
3q5wA00 1.20.58.1590 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Tethering factor for nuclear proteasome Cut8/Sts1 0.62 52.0 5.18e-01 96.4% 85.4%
1hzfA00 1.50.10.20 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.61 55.0 4.70e-01 95.8% 67.5%
6ljaA01 1.50.10.100 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Chondroitin AC/alginate lyase 0.59 53.0 4.27e-01 96.4% 52.2%
2c9kA01 1.20.190.10 Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › Pesticidal crystal protein, N-terminal domain 0.57 45.0 4.17e-01 81.2% 84.1%
4jgwA01 1.20.870.10 Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 0.57 43.0 4.67e-01 97.9% 94.2%
2w2dD01 1.20.1120.10 Mainly Alpha › Up-down Bundle › "Clostridium botulinum neurotoxin B, ""coiled-coil"" domain" › "Clostridium botulinum neurotoxin b, ""coiled-coil"" domain" 0.56 40.0 3.12e-01 73.4% 89.9%
1e8yA03 1.25.40.70 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Phosphatidylinositol 3-kinase, accessory domain (PIK) 0.55 45.0 4.65e-01 97.9% 89.2%
7bi4A01 1.25.40.70 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Phosphatidylinositol 3-kinase, accessory domain (PIK) 0.55 45.0 4.62e-01 98.4% 90.3%
3juiA00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.53 42.0 4.37e-01 86.5% 92.5%
2xs1A01 1.25.40.280 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › alix/aip1 like domains 0.53 43.0 3.58e-01 88.0% 80.4%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3447953 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.76 53.0 4.60e-01 70.3% 85.9%
4997738 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.75 55.0 6.24e-01 89.1% 99.3%
3891948 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.73 67.0 5.85e-01 97.9% 74.6%
3740692 109.4.1.356 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans 0.72 59.0 4.56e-01 85.9% 46.7%
3786684 109.4.1.269 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › EFR3 0.71 65.0 6.54e-01 97.4% 100.0%
4369385 109.4.1.909 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DOP1_C 0.71 66.0 5.94e-01 100.0% 89.2%
3405087 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.70 51.0 5.27e-01 75.5% 93.5%
3252711 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.69 64.0 4.50e-01 100.0% 55.7%
4013618 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.69 62.0 5.90e-01 100.0% 83.2%
4301709 109.4.1.423 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PP4R3 0.68 61.0 4.32e-01 97.9% 50.8%
3824988 109.3.1.339 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Vps35 0.67 56.0 5.85e-01 91.1% 97.1%
3506098 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.62 57.0 5.39e-01 100.0% 87.4%
3353383 109.4.1.32 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MIF4G 0.62 51.0 5.07e-01 100.0% 84.0%
3563048 109.4.1.32 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MIF4G 0.62 57.0 3.95e-01 100.0% 31.7%
3836254 109.4.1.578 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF3730 0.62 55.0 5.36e-01 96.9% 88.4%
3952713 109.4.1.497 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › EccD 0.55 47.0 4.02e-01 91.7% 66.3%
3910108 109.4.1.2034 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_GEMI5, GEMI5_RBS 0.54 48.0 3.57e-01 99.0% 41.5%
3472191 109.4.1.27 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › W2 0.53 45.0 4.45e-01 90.6% 88.5%
3283147 310.2.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.51 41.0 3.70e-01 83.9% 84.6%
3760189 604.5.1.31 ↗ alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › TRAM_LAG1_CLN8 0.50 40.0 3.88e-01 84.9% 97.7%
D2 high residues 505-653
PDB
Domain cluster: rep: unknown_similar_to_AMEV003__YP_008004365__Choristoneura_biennis_entomopoxvirus__10288__D474-617
D3 high residues 659-766
PDB
Domain cluster: rep: hypothetical_protein_McnAVgp042__NP_613125__Mamestra_configurata_nucleopolyhedrovirus_A__207830__D640-729
D4 medium residues 249-385
PDB
Domain cluster: rep: ORF105_protein__YP_009552665__Operophtera_brumata_nucleopolyhedrovirus__1046267__D232-367
D5 medium residues 386-502
PDB
Domain cluster: rep: asb031__YP_009112592__Agrotis_segetum_nucleopolyhedrovirus_B__1580580__D385-500