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orf60
Euk-VirAlcelaphine_gammaherpesvirus_2
orf60__YP_009044443__Alcelaphine_gammaherpesvirus_2__138184
Identity
- Accession:
- YP_009044443 ↗
- Protein ID:
- orf60
- Kingdom:
- euk
Quality
88.1
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Macavirus›
Alcelaphine_gammaherpesvirus_2
TaxID: 138184
Cluster
View cluster (59 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 38-121_148-207_258-281
Domain cluster:
rep: ribonucleotide_reductase_subunit_2__YP_009052007__Elephant_endotheliotropic_herpesvirus_5__768738__D11-211
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00268.28 best | Ribonuc_red_sm | 64.6 | 1.40e-17 | 50.6% | 22.1% |
| PF00268.28 | Ribonuc_red_sm | 60.0 | 3.50e-16 | 50.0% | 27.8% |
D2
medium
residues 122-147_208-257
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3f1bA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.64 | 44.0 | 3.37e-01 | 72.4% | 52.5% |
| 1v4gA01 | 6.10.140.800 | Special › Helix non-globular › Helix Hairpins › | 0.57 | 44.0 | 4.54e-01 | 94.7% | 92.8% |
| 2raeA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.56 | 49.0 | 3.97e-01 | 94.7% | 56.9% |
| 4mfiA00 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.55 | 40.0 | 2.61e-01 | 80.3% | 87.1% |
| 1uxtA01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.54 | 45.0 | 3.05e-01 | 92.1% | 72.9% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 151585 | 150.1.2.1 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Heme oxygenase/Ribonucleotide reductase › Ribonuc_red_sm | 0.91 | 86.0 | 5.64e-01 | 100.0% | 50.7% |
| 3559704 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.75 | 51.0 | 4.81e-01 | 72.4% | 58.9% |
| 3915925 | 5069.1.3.98 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › ARL6IP6 | 0.72 | 65.0 | 5.97e-01 | 100.0% | 88.8% |
| 4031352 | 6026.1.1.43 ↗ | alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain › DUF1024 | 0.60 | 46.0 | 4.55e-01 | 85.5% | 98.8% |
| 3613658 | 2484.1.1.4 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H | 0.57 | 45.0 | 3.41e-01 | 86.8% | 77.9% |
| 3262581 | 4156.1.1.0 ↗ | alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like | 0.57 | 50.0 | 3.91e-01 | 98.7% | 98.2% |
| 3940263 | 3409.1.1.0 ↗ | a+b duplicates or obligate multimers › Vacuolar protein sorting-associated protein 30 BARA domain › Vacuolar protein sorting-associated protein 30 BARA domain › Vacuolar protein sorting-associated protein 30 BARA domain | 0.56 | 49.0 | 4.03e-01 | 100.0% | 73.6% |
| 4972308 | 2007.6.1.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › SIS | 0.53 | 43.0 | 3.20e-01 | 90.8% | 80.5% |