←Back to structures

orf61

Euk-Vir

Alcelaphine_gammaherpesvirus_2

orf61__YP_009044444__Alcelaphine_gammaherpesvirus_2__138184

Identity

Accession:: YP_009044444 ↗
Protein ID:: orf61
Kingdom:: euk

Quality

89.5 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Macavirus› Alcelaphine_gammaherpesvirus_2

TaxID: 138184

Cluster

View cluster (122 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 193-297_351-407

PDB

Domain cluster: rep: IMGVR_UViG_3300042092_000730-3300042092-Ga0453238_010587_859_2079__D220-402

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02867.21 best	Ribonuc_red_lgC	53.2	2.80e-14	67.9%	22.9%
PF02867.21	Ribonuc_red_lgC	49.8	3.00e-13	35.8%	10.1%

D2 medium residues 12-191

PDB

Domain cluster: rep: ribonucleotide_reductase_subunit_1__YP_401655__Human_gammaherpesvirus_4__10376__D15-179

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00317.27 best	Ribonuc_red_lgN	64.3	1.20e-17	56.1%	96.1%

D3 medium residues 298-350

PDB

Domain cluster: representative

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2wghA00	3.20.70.20	Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain ›	0.94	85.0	4.66e-01	100.0%	7.9%
4mp8A01	3.30.1780.10	Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1	0.69	49.0	3.55e-01	77.4%	99.4%
1fthA00	3.90.470.20	Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain	0.62	50.0	3.91e-01	90.6%	51.3%
2mphA01	1.10.720.80	Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 ›	0.57	47.0	4.05e-01	94.3%	62.1%
1sw2A01	3.40.190.10	Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II	0.56	40.0	2.84e-01	75.5%	48.8%
8a8oA01	3.90.700.10	Alpha Beta › Alpha-Beta Complex › Flavocytochrome C3; Chain A, domain 1 › Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain	0.52	45.0	3.60e-01	98.1%	94.4%

ECOD (12)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4822330	2500.1.1.2 ↗	a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC	0.97	91.0	5.16e-01	100.0%	11.6%
3823652	2500.1.1.2 ↗	a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC	0.94	85.0	4.73e-01	100.0%	9.0%
4015532	2500.1.1.0 ↗	a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel	0.94	85.0	4.72e-01	100.0%	8.9%
996122	2500.1.1.2 ↗	a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC	0.92	81.0	4.50e-01	100.0%	8.6%
4298539	2500.1.1.2 ↗	a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC	0.90	84.0	4.70e-01	100.0%	10.5%
3695698	3692.1.1.0 ↗	a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain	0.72	50.0	3.75e-01	75.5%	100.0%
4333412	301.8.1.1 ↗	a+b three layers › Bacillus chorismate mutase-like › 4'-phosphopantetheinyl transferase › 4'-phosphopantetheinyl transferase › ACPS	0.59	50.0	3.84e-01	92.5%	49.6%
3943195	5065.1.1.3 ↗	alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › BPD_transp_2	0.59	47.0	2.94e-01	88.7%	88.7%
2995615	178.1.1.0 ↗	alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain	0.54	38.0	3.21e-01	77.4%	89.8%
3275494	304.4.1.53 ↗	a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › R1_ABCA1	0.52	39.0	3.55e-01	83.0%	78.7%
3379426	4205.1.1.0 ↗	a+b two layers › SMI1/KNR4-like › SMI1/KNR4-like › SMI1/KNR4-like	0.52	39.0	2.74e-01	88.7%	74.5%
3290624	5065.1.1.3 ↗	alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › BPD_transp_2	0.50	42.0	2.66e-01	94.3%	72.7%

D4 medium residues 409-613

PDB

Domain cluster: rep: rr1__YP_009552690__Operophtera_brumata_nucleopolyhedrovirus__1046267__D445-618_684-706

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02867.21 best	Ribonuc_red_lgC	147.1	1.00e-42	100.0%	34.2%

D5 medium residues 614-672

PDB

Domain cluster: rep: BORF2__YP_001129452__Human_herpesvirus_4_type_2__12509__D615-667

D6 medium residues 673-727

PDB

Domain cluster: rep: Ribonucleotide_reductase_large_subunit_protein__YP_009143381__Raccoonpox_virus__10256__D684-741

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02867.21 best	Ribonuc_red_lgC	38.3	9.30e-10	100.0%	9.5%