←Back to structures
origin_of_replication-binding_protein
Euk-VirNoumeavirus
origin_of_replication-binding_protein__YP_009345432__Noumeavirus__1955558
Identity
- Accession:
- YP_009345432 ↗
- Protein ID:
- origin_of_replication-binding_protein
- Kingdom:
- euk
Quality
70.2
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Megaviricetes›
Pimascovirales›
Marseilleviridae›
Marseillevirus›
Noumeavirus
TaxID: 1955558
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 194-337
D2
high
residues 367-433
D3
high
residues 473-633
Domain cluster:
rep: MK064563__AZI75768.1__SBFV2-gp01__00001__D223-383
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02399.22 best | Herpes_ori_bp | 55.3 | 4.70e-15 | 93.2% | 18.4% |
| PF04851.22 | ResIII | 22.9 | 9.70e-05 | 68.3% | 70.7% |
D4
high
residues 649-735
Domain cluster:
rep: DNA_replication_origin-binding_helicase__YP_009010995__Chimpanzee_herpesvirus_strain_105640__332937__D268-285_303-382_532-556
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02399.22 best | Herpes_ori_bp | 31.6 | 6.90e-08 | 100.0% | 10.0% |
D5
medium
residues 44-192
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2cpdA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.58 | 27.0 | 3.65e-01 | 72.5% | 85.3% |
| 2jx2A00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.54 | 28.0 | 3.59e-01 | 75.2% | 85.1% |
| 3c0wA02 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.51 | 30.0 | 3.46e-01 | 83.2% | 80.6% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5012467 | 310.3.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related | 0.58 | 35.0 | 3.97e-01 | 72.5% | 79.1% |
| 4999035 | 873.1.1.13 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › ATC_hydrolase | 0.53 | 42.0 | 3.96e-01 | 85.9% | 76.1% |
| 3413783 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.52 | 27.0 | 3.21e-01 | 70.5% | 72.0% |
| 5020278 | 3012.1.1.19 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › PF27313 | 0.51 | 36.0 | 3.98e-01 | 82.6% | 92.2% |
| 4501630 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.51 | 23.0 | 3.00e-01 | 75.8% | 75.0% |
| 3818293 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.51 | 39.0 | 3.25e-01 | 81.2% | 48.2% |