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origin_of_replication-binding_protein

Euk-Vir

Noumeavirus

origin_of_replication-binding_protein__YP_009345433__Noumeavirus__1955558

Identity

Accession:
YP_009345433 ↗
Protein ID:
origin_of_replication-binding_protein
Kingdom:
euk

Quality

70.1 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Pimascovirales› Marseilleviridae› Marseillevirus› Noumeavirus

TaxID: 1955558

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 19-129
PDB
D2 high residues 153-210
PDB
Domain cluster: rep: conserved_putative_helicase__YP_009094625__Melbournevirus__1560514__D838-914
D3 high residues 259-362
PDB
Domain cluster: rep: hypothetical_protein_GMAR_ORF3__YP_009310120__Golden_Marseillevirus__1720526__D249-342
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7dg2C01 1.10.10.1200 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › MAGE homology domain, winged helix WH1 motif 0.71 46.0 5.25e-01 81.7% 89.3%
3rrkA03 3.30.70.2750 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 30.0 3.48e-01 88.5% 62.2%
2fswA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 40.0 4.05e-01 95.2% 72.5%
1ub9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 40.0 4.06e-01 96.2% 74.0%
3gkuA03 3.30.1370.50 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain 0.57 34.0 3.89e-01 83.7% 83.1%
1ku9B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 37.0 3.99e-01 100.0% 78.2%
1p6rA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 37.0 4.05e-01 92.3% 84.1%
5hs7B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 39.0 4.05e-01 96.2% 76.5%
2dk8A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 35.0 4.27e-01 86.5% 100.0%
4nb5B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 38.0 4.05e-01 100.0% 83.5%
5jbrA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 37.0 3.96e-01 95.2% 81.4%
4hqeA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 39.0 3.90e-01 93.3% 71.4%
2mlgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 36.0 4.02e-01 94.2% 88.3%
1z7uB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 38.0 3.80e-01 96.2% 68.2%
1yyvB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 38.0 3.79e-01 95.2% 67.9%
7txwA01 2.90.20.10 Mainly Beta › Orthogonal Prism › Plasmodium vivax P25 fold › Plasmodium vivax P25 domain 0.54 32.0 3.72e-01 100.0% 81.3%
6j0eB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 37.0 3.63e-01 96.2% 63.2%
5xnsC00 1.10.10.580 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E 0.54 35.0 4.01e-01 98.1% 98.6%
3cuqA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 36.0 3.98e-01 97.1% 90.0%
2zihC00 1.10.3630.10 Mainly Alpha › Orthogonal Bundle › yeast vps74-n-term truncation variant fold › yeast vps74-n-term truncation variant domain like 0.54 45.0 3.39e-01 95.2% 54.8%
4z7eA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.53 38.0 3.30e-01 81.7% 47.0%
2ln3A00 3.30.110.140 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › 0.53 34.0 3.65e-01 85.6% 79.5%
3l7wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 35.0 3.54e-01 91.3% 66.7%
6qpqB00 1.10.10.580 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E 0.53 37.0 4.00e-01 93.3% 93.8%
4ne4A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.52 38.0 3.28e-01 81.7% 47.3%
2f2eA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 37.0 3.91e-01 95.2% 85.7%
3elkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 36.0 3.66e-01 93.3% 71.4%
3r0aA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 37.0 3.62e-01 96.2% 66.7%
3ll7A01 1.10.10.1110 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Methyltransferase PG1098, N-terminal domain 0.51 29.0 3.32e-01 95.2% 77.8%
1sfxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 36.0 3.65e-01 96.2% 74.0%
4ejoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 32.0 3.22e-01 84.6% 58.9%
2xigA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 37.0 3.85e-01 100.0% 89.0%
6iy8A01 3.30.1380.20 Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › Trafficking protein particle complex subunit 3 0.50 39.0 3.27e-01 84.6% 67.7%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4027193 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.68 47.0 5.04e-01 83.7% 82.2%
5049729 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 42.0 4.83e-01 85.6% 92.0%
5078195 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 44.0 5.08e-01 81.7% 100.0%
3877590 327.11.2.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.59 34.0 3.89e-01 79.8% 77.3%
4978789 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 43.0 4.52e-01 93.3% 84.2%
3785576 101.1.2.24 ↗ alpha arrays › HTH › HTH › winged helix domain › MAGE 0.59 48.0 4.63e-01 88.5% 80.0%
3306726 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 40.0 4.38e-01 98.1% 93.8%
1003939 320.1.1.1 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.57 34.0 3.89e-01 83.7% 83.1%
3946399 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 43.0 4.01e-01 89.4% 63.8%
5010592 101.1.2.68 ↗ alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc34 0.57 37.0 3.62e-01 95.2% 57.5%
4672445 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 43.0 4.27e-01 95.2% 76.4%
5075002 101.1.2.525 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7646 0.57 36.0 3.78e-01 89.4% 69.5%
4149931 101.1.2.39 ↗ alpha arrays › HTH › HTH › winged helix domain › SMC_ScpA 0.56 36.0 4.12e-01 98.1% 95.7%
4593646 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 39.0 4.14e-01 96.2% 84.4%
3512389 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 36.0 4.04e-01 86.5% 94.3%
5030899 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 37.0 4.24e-01 93.3% 100.0%
5035546 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 37.0 4.01e-01 98.1% 83.5%
4969310 101.1.2.892 ↗ alpha arrays › HTH › HTH › winged helix domain › ArsR 0.56 39.0 3.44e-01 96.2% 48.4%
4132486 101.1.2.187 ↗ alpha arrays › HTH › HTH › winged helix domain › Rep3_C 0.56 42.0 4.41e-01 95.2% 93.3%
3347818 101.1.2.529 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7599 0.55 38.0 4.21e-01 98.1% 98.7%
4957834 101.1.2.920 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_TbsP_C 0.55 39.0 3.82e-01 96.2% 65.0%
4945774 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 40.0 4.11e-01 97.1% 81.0%
4322135 101.1.2.39 ↗ alpha arrays › HTH › HTH › winged helix domain › SMC_ScpA 0.55 35.0 3.96e-01 97.1% 94.3%
4452846 101.1.2.39 ↗ alpha arrays › HTH › HTH › winged helix domain › SMC_ScpA 0.55 36.0 4.08e-01 94.2% 98.6%
5050065 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.55 38.0 3.93e-01 96.2% 77.9%
4940657 101.1.2.269 ↗ alpha arrays › HTH › HTH › winged helix domain › SocA_Panacea 0.55 45.0 3.97e-01 94.2% 58.5%
5042935 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.55 38.0 3.96e-01 96.2% 78.9%
3588037 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 38.0 3.75e-01 94.2% 67.3%
4927470 101.1.2.39 ↗ alpha arrays › HTH › HTH › winged helix domain › SMC_ScpA 0.55 36.0 4.00e-01 92.3% 92.0%
4248896 320.1.1.0 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain 0.54 33.0 3.88e-01 94.2% 95.4%
5059035 101.1.2.892 ↗ alpha arrays › HTH › HTH › winged helix domain › ArsR 0.54 38.0 3.97e-01 96.2% 83.3%
4609006 101.1.21.0 ↗ alpha arrays › HTH › HTH › HTH in T7 RNA polymerase 0.54 46.0 3.69e-01 98.1% 71.7%
5077304 310.3.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.54 36.0 4.13e-01 82.7% 94.7%
3950059 320.1.1.1 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.54 32.0 3.76e-01 78.8% 88.2%
4033445 7523.1.1.17 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › OpuAC 0.54 38.0 3.16e-01 81.7% 39.7%
3890261 101.1.2.65 ↗ alpha arrays › HTH › HTH › winged helix domain › Rad21_Rec8 0.54 35.0 3.95e-01 97.1% 97.1%
4983445 101.1.2.39 ↗ alpha arrays › HTH › HTH › winged helix domain › SMC_ScpA 0.54 35.0 3.95e-01 95.2% 97.1%
4991088 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 36.0 3.90e-01 95.2% 88.7%
4929958 101.1.2.15 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR 0.54 39.0 3.77e-01 96.2% 67.2%
3478525 320.1.1.7 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain › PUS7L_N 0.53 37.0 4.10e-01 100.0% 100.0%
4946426 3241.1.1.0 ↗ alpha arrays › Golgi phosphoprotein 3 › Golgi phosphoprotein 3 › Golgi phosphoprotein 3 0.53 44.0 3.51e-01 91.3% 59.5%
3987672 320.1.1.1 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.53 31.0 3.61e-01 82.7% 86.8%
4985497 101.1.2.922 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7123 0.53 39.0 4.13e-01 96.2% 96.5%
3820802 101.1.2.529 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7599 0.53 37.0 3.71e-01 91.3% 70.0%
3470890 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 42.0 4.20e-01 88.5% 89.5%
4937013 101.1.2.39 ↗ alpha arrays › HTH › HTH › winged helix domain › SMC_ScpA 0.53 36.0 4.08e-01 100.0% 100.0%
3868765 101.1.2.178 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_61 0.52 39.0 4.11e-01 94.2% 89.5%
3443787 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 37.0 3.96e-01 98.1% 91.8%
3494759 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 41.0 4.05e-01 93.3% 81.7%
5068345 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 33.0 3.79e-01 93.3% 98.6%
4941238 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 33.0 3.74e-01 97.1% 97.1%
3267490 101.1.2.24 ↗ alpha arrays › HTH › HTH › winged helix domain › MAGE 0.51 43.0 3.42e-01 98.1% 51.9%
5068034 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 33.0 3.23e-01 92.3% 58.3%
4970289 101.1.2.30 ↗ alpha arrays › HTH › HTH › winged helix domain › TrmB 0.50 34.0 3.63e-01 95.2% 81.1%
5029475 101.1.2.39 ↗ alpha arrays › HTH › HTH › winged helix domain › SMC_ScpA 0.50 33.0 3.69e-01 97.1% 97.1%
3990873 101.1.2.24 ↗ alpha arrays › HTH › HTH › winged helix domain › MAGE 0.50 43.0 3.51e-01 99.0% 62.3%
5058139 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.50 33.0 3.69e-01 87.5% 97.1%
4996185 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.50 36.0 3.65e-01 96.2% 77.0%
5071263 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.50 36.0 3.78e-01 96.2% 88.9%