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origin_of_replication-binding_protein
Euk-VirNoumeavirus
origin_of_replication-binding_protein__YP_009345574__Noumeavirus__1955558
Identity
- Accession:
- YP_009345574 ↗
- Protein ID:
- origin_of_replication-binding_protein
- Kingdom:
- euk
Quality
78.0
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Megaviricetes›
Pimascovirales›
Marseilleviridae›
Marseillevirus›
Noumeavirus
TaxID: 1955558
Cluster
View cluster (17 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 351-420
Domain cluster:
rep: origin_of_replication-binding_protein__YP_009345580__Noumeavirus__1955558__D365-435
D2
high
residues 464-607
Domain cluster:
rep: MK064563__AZI75768.1__SBFV2-gp01__00001__D223-383
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02399.22 best | Herpes_ori_bp | 55.5 | 4.30e-15 | 96.5% | 18.2% |
D3
high
residues 616-743_815-833
Domain cluster:
rep: MK064563__AZI75768.1__SBFV2-gp01__00001__D223-383
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02399.22 best | Herpes_ori_bp | 39.2 | 3.70e-10 | 89.1% | 14.5% |
D4
medium
residues 82-184_283-328
Domain cluster:
rep: origin_of_replication-binding_protein__YP_009345590__Noumeavirus__1955558__D99-190_290-327
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2dchX01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.56 | 25.0 | 3.07e-01 | 75.8% | 63.4% |
| 2xigA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 22.0 | 2.85e-01 | 78.5% | 63.7% |
| 2gukA00 | 3.30.2190.10 | Alpha Beta › 2-Layer Sandwich › PG1857-like › PG1857-like | 0.53 | 31.0 | 3.48e-01 | 81.9% | 74.8% |
| 1x60A01 | 3.30.70.1070 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sporulation related repeat | 0.51 | 25.0 | 3.44e-01 | 70.5% | 95.8% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3677440 | 862.1.1.11 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › AEP_C962R | 0.73 | 65.0 | 5.35e-01 | 91.9% | 97.1% |
| 3802060 | 862.1.1.0 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain | 0.73 | 65.0 | 5.30e-01 | 92.6% | 93.3% |
| 3512046 | 862.1.1.0 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain | 0.73 | 64.0 | 5.24e-01 | 91.9% | 97.3% |
| 3629253 | 390.1.1.0 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like | 0.69 | 30.0 | 3.92e-01 | 91.9% | 72.3% |
| 3216407 | 390.1.1.0 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like | 0.68 | 30.0 | 4.07e-01 | 89.3% | 77.5% |
| 3717917 | 862.1.1.0 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain | 0.68 | 61.0 | 4.45e-01 | 94.0% | 100.0% |
| 3796258 | 390.1.1.0 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like | 0.63 | 29.0 | 3.87e-01 | 91.9% | 82.7% |
| 3243609 | 390.1.1.0 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like | 0.62 | 27.0 | 3.70e-01 | 89.3% | 80.0% |
| 3619892 | 390.1.1.0 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like | 0.60 | 28.0 | 3.73e-01 | 89.9% | 82.7% |
| 3176762 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.58 | 28.0 | 3.46e-01 | 89.3% | 73.3% |
| 3818293 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.54 | 39.0 | 3.18e-01 | 74.5% | 48.5% |
| 3594603 | 3012.1.1.0 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain | 0.50 | 29.0 | 3.40e-01 | 94.6% | 82.0% |
D5
medium
residues 185-282
D6
medium
residues 744-814
D7
medium
residues 942-1061