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outer_capsid_protein
Euk-VirGuangxi_orbivirus
outer_capsid_protein__YP_009551620__Guangxi_orbivirus__2306813
Identity
- Accession:
- YP_009551620 ↗
- Protein ID:
- outer_capsid_protein
- Kingdom:
- euk
Quality
55.5
mean pLDDT
Taxonomy
Orthornavirae›
Duplornaviricota›
Resentoviricetes›
Reovirales›
Sedoreoviridae›
Orbivirus›
Guangxi_orbivirus
TaxID: 2306813
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 620-710
D2
medium
residues 144-190_748-831
D3
medium
residues 319-380
D4
medium
residues 381-505
Domain cluster:
rep: VP2__YP_008719906__Mobuck_virus__1408137__D376-491
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6gy8A01 | 1.20.1170.10 | Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › | 0.59 | 41.0 | 3.05e-01 | 72.0% | 95.8% |
| 3o3mB01 | 1.20.1270.370 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.56 | 34.0 | 3.74e-01 | 85.6% | 72.8% |
| 2o7gA00 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.56 | 33.0 | 3.86e-01 | 88.8% | 83.0% |
| 1s35A01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.55 | 34.0 | 3.75e-01 | 71.2% | 75.2% |
| 3uumA00 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.53 | 33.0 | 3.43e-01 | 71.2% | 63.9% |
| 3no6A00 | 1.20.910.10 | Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like | 0.53 | 45.0 | 3.62e-01 | 90.4% | 77.4% |
| 4cc9B00 | 1.20.5.4730 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.52 | 29.0 | 3.19e-01 | 79.2% | 67.3% |
| 7d5qA01 | 1.20.1250.20 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains | 0.52 | 39.0 | 3.45e-01 | 77.6% | 92.3% |
| 1fewA00 | 1.20.58.70 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.52 | 40.0 | 3.62e-01 | 82.4% | 72.8% |
| 3fbxA00 | 3.60.60.30 | Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › | 0.51 | 45.0 | 2.98e-01 | 96.0% | 49.4% |
| 2pbiA02 | 1.10.1240.60 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › | 0.50 | 26.0 | 2.83e-01 | 77.6% | 57.4% |
| 3edvB01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.50 | 37.0 | 3.60e-01 | 80.0% | 69.9% |
| 1u61A00 | 1.10.1520.10 | Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain | 0.50 | 39.0 | 3.94e-01 | 84.0% | 89.8% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3586089 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.56 | 40.0 | 3.61e-01 | 72.8% | 74.1% |
| 3260628 | 109.1.1.16 ↗ | alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › GST_C_6 | 0.55 | 46.0 | 4.14e-01 | 90.4% | 90.2% |
| 3642400 | 3711.1.1.4 ↗ | alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein › DOG1 | 0.55 | 38.0 | 3.20e-01 | 71.2% | 83.6% |
| 3782912 | 5001.1.1.6 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Bac_rhodopsin | 0.54 | 42.0 | 3.31e-01 | 83.2% | 61.5% |
| 3952992 | 1079.1.1.7 ↗ | alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA › SfLAP | 0.53 | 37.0 | 3.35e-01 | 72.0% | 64.1% |
| 3212195 | 622.4.1.0 ↗ | alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related | 0.52 | 37.0 | 4.01e-01 | 74.4% | 87.3% |
| 3900921 | 604.1.1.1 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin | 0.52 | 39.0 | 3.97e-01 | 81.6% | 82.5% |
| 4289864 | 601.25.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › TrmE connector domain › TrmE connector domain | 0.51 | 36.0 | 3.45e-01 | 72.0% | 90.0% |
| 3883945 | 1203.1.2.1 ↗ | alpha bundles › Shroom domain 2 › Shroom domain 2 › Human SD2 › ASD2 | 0.51 | 40.0 | 3.53e-01 | 84.0% | 63.7% |
| 3495293 | 1203.1.2.0 ↗ | alpha bundles › Shroom domain 2 › Shroom domain 2 › Human SD2 | 0.51 | 40.0 | 3.89e-01 | 83.2% | 79.3% |
| 4024445 | 3871.1.1.1 ↗ | alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN | 0.50 | 40.0 | 3.85e-01 | 83.2% | 79.3% |