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p-loop_NTPase
Euk-VirHomarus_gammarus_nudivirus
p-loop_NTPase__YP_010087693__Homarus_gammarus_nudivirus__2509616
Identity
- Accession:
- YP_010087693 ↗
- Protein ID:
- p-loop_NTPase
- Kingdom:
- euk
Quality
61.8
mean pLDDT
Taxonomy
TaxID: 2509616
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 163-251_326-407
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1khtB00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.78 | 56.0 | 5.37e-01 | 72.5% | 100.0% |
| 3lv8A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.72 | 55.0 | 5.14e-01 | 77.8% | 100.0% |
| 5uivA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.72 | 55.0 | 4.97e-01 | 78.4% | 96.0% |
| 1e9fA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.70 | 53.0 | 5.02e-01 | 78.4% | 96.5% |
| 2bdtA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.65 | 48.0 | 4.80e-01 | 74.9% | 98.8% |
| 2qorA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.64 | 47.0 | 5.39e-01 | 76.0% | 100.0% |
| 6wctD01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.61 | 46.0 | 4.95e-01 | 78.4% | 89.8% |
| 1z8fA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.61 | 43.0 | 5.00e-01 | 75.4% | 100.0% |
| 1tzbA02 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.59 | 41.0 | 4.44e-01 | 84.8% | 85.6% |
| 1fvpA00 | 3.20.20.30 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain | 0.55 | 41.0 | 3.75e-01 | 78.4% | 99.6% |
| 3fj1A01 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.51 | 40.0 | 3.92e-01 | 84.8% | 77.7% |
| 3fxaA00 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.50 | 41.0 | 3.96e-01 | 86.5% | 81.2% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4943200 | 2004.1.1.79 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Thymidylate_kin | 0.77 | 58.0 | 5.39e-01 | 77.2% | 96.7% |
| 4933472 | 2004.1.1.79 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Thymidylate_kin | 0.77 | 59.0 | 5.32e-01 | 78.4% | 99.1% |
| 5025416 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.77 | 57.0 | 5.36e-01 | 75.4% | 99.5% |
| 4946728 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.77 | 57.0 | 5.30e-01 | 76.6% | 96.7% |
| 4569464 | 2004.1.1.79 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Thymidylate_kin | 0.76 | 55.0 | 5.27e-01 | 73.7% | 100.0% |
| 4945369 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.75 | 57.0 | 5.22e-01 | 77.8% | 98.1% |
| 4185559 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.73 | 55.0 | 5.04e-01 | 77.2% | 95.9% |
| 4029897 | 2004.1.1.192 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_18 | 0.72 | 54.0 | 5.28e-01 | 76.6% | 99.5% |
| 4433845 | 2004.1.1.71 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › IPPT | 0.72 | 53.0 | 4.47e-01 | 75.4% | 90.7% |
| None | — | 0.70 | 51.0 | 4.89e-01 | 75.4% | 93.5% | |
| 5043508 | 2004.1.1.192 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_18 | 0.69 | 49.0 | 4.93e-01 | 72.5% | 88.0% |
| 3890291 | 2004.1.1.41 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ADK | 0.67 | 51.0 | 4.22e-01 | 78.4% | 94.1% |
| 4361709 | 2004.1.1.105 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinase-PPPase | 0.64 | 46.0 | 4.80e-01 | 73.1% | 79.4% |
| 4645891 | 2004.1.1.105 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinase-PPPase | 0.64 | 47.0 | 4.91e-01 | 75.4% | 80.6% |
| 3875685 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.64 | 48.0 | 4.06e-01 | 77.2% | 94.9% |
| 4002879 | 2004.1.1.50 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Guanylate_kin | 0.58 | 44.0 | 4.30e-01 | 78.4% | 97.4% |
| 3233964 | 2004.1.1.104 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Sulfotransfer_2 | 0.56 | 41.0 | 3.69e-01 | 75.4% | 73.3% |
| 4278210 | 2007.6.1.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain | 0.55 | 44.0 | 4.41e-01 | 84.8% | 84.0% |
| 3938140 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.54 | 41.0 | 3.69e-01 | 77.8% | 86.0% |
| 4999206 | 2007.6.1.5 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › bact-PGI_C | 0.53 | 41.0 | 3.95e-01 | 84.8% | 70.8% |
| 3595117 | 140.1.1.0 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.50 | 26.0 | 2.44e-01 | 89.5% | 38.6% |
| 1114698 | 2007.6.1.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › SIS | 0.50 | 41.0 | 3.96e-01 | 86.5% | 80.7% |
D2
medium
residues 252-325
Domain cluster:
representative
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3mvpA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.65 | 51.0 | 4.08e-01 | 86.5% | 47.0% |
| 5djsA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.59 | 40.0 | 3.24e-01 | 100.0% | 36.4% |
| 6z0fA02 | 1.25.40.680 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Type VII secretion system EssB, C-terminal-like domain | 0.58 | 36.0 | 2.85e-01 | 100.0% | 27.7% |
| 2qgaB01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.58 | 40.0 | 3.54e-01 | 73.0% | 60.5% |
| 2gsvA00 | 6.10.140.40 | Special › Helix non-globular › Helix Hairpins › | 0.57 | 38.0 | 3.90e-01 | 90.5% | 74.6% |
| 1z21A00 | 1.10.10.1000 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Type III secretion system virulence factor YopR, core domain | 0.54 | 45.0 | 4.28e-01 | 100.0% | 78.1% |
| 3u1nB01 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.54 | 41.0 | 2.81e-01 | 87.8% | 67.7% |
| 3cwzB01 | 1.20.58.900 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › RUN domain | 0.54 | 45.0 | 3.75e-01 | 100.0% | 85.6% |
| 2ra1A03 | 1.20.58.770 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.53 | 40.0 | 4.34e-01 | 100.0% | 95.2% |
| 1imvA02 | 3.30.497.10 | Alpha Beta › 2-Layer Sandwich › Antithrombin; Chain I, domain 2 › Antithrombin, subunit I, domain 2 | 0.53 | 42.0 | 3.12e-01 | 87.8% | 99.0% |
| 3n5lA03 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.53 | 37.0 | 4.02e-01 | 93.2% | 98.2% |
| 1wz9A01 | 3.30.497.10 | Alpha Beta › 2-Layer Sandwich › Antithrombin; Chain I, domain 2 › Antithrombin, subunit I, domain 2 | 0.51 | 40.0 | 2.92e-01 | 87.8% | 98.6% |
| 3smvA02 | 1.10.150.750 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.51 | 30.0 | 3.02e-01 | 73.0% | 53.2% |
| 2oznB01 | 1.20.1270.90 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like | 0.51 | 36.0 | 3.58e-01 | 81.1% | 71.2% |
| 3s64A00 | 1.10.225.10 | Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like | 0.51 | 36.0 | 3.56e-01 | 95.9% | 69.1% |
| 1b5lA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.50 | 42.0 | 3.40e-01 | 95.9% | 74.3% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3630104 | 192.24.1.6 ↗ | alpha bundles › Long alpha-hairpin › RPC62 helical hairpin domain › RPC62 helical hairpin domain › RNA_pol_Rpc82, HTH_9, POLR3C_WHD | 0.70 | 52.0 | 3.27e-01 | 78.4% | 18.4% |
| 3582573 | 192.24.1.0 ↗ | alpha bundles › Long alpha-hairpin › RPC62 helical hairpin domain › RPC62 helical hairpin domain | 0.66 | 51.0 | 4.51e-01 | 83.8% | 61.8% |
| 3223457 | 101.1.2.661 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_9, POLR3C_WHD | 0.63 | 46.0 | 3.13e-01 | 78.4% | 25.0% |
| 3461645 | 109.4.1.628 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sec7-like_HUS | 0.62 | 46.0 | 2.81e-01 | 82.4% | 12.3% |
| 3967364 | 4990.1.1.1 ↗ | alpha arrays › Lipase chaperone LifO-like › Lipase chaperone LifO-like › Lipase chaperone LifO-like › Lipase_chap | 0.62 | 47.0 | 3.18e-01 | 81.1% | 36.3% |
| 3930816 | 101.1.2.236 ↗ | alpha arrays › HTH › HTH › winged helix domain › POLR3C_WHD | 0.60 | 47.0 | 3.18e-01 | 85.1% | 23.6% |
| 1447882 | 148.1.3.28 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_11 | 0.60 | 38.0 | 2.90e-01 | 89.2% | 25.4% |
| 5001060 | 1134.1.1.0 ↗ | alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain | 0.59 | 39.0 | 3.90e-01 | 93.2% | 65.4% |
| 3717640 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.59 | 46.0 | 3.48e-01 | 87.8% | 41.0% |
| 3202976 | 7023.1.1.0 ↗ | alpha bundles › helical ridge domain of D-alanyl transfer protein › helical ridge domain of D-alanyl transfer protein › helical ridge domain of D-alanyl transfer protein | 0.59 | 46.0 | 3.63e-01 | 89.2% | 57.1% |
| 3574981 | 604.12.1.91 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › RSLD_CPSF6 | 0.58 | 43.0 | 4.47e-01 | 98.6% | 87.1% |
| 3181590 | 4044.1.1.0 ↗ | alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins | 0.58 | 37.0 | 3.62e-01 | 81.1% | 58.7% |
| 3976109 | 632.7.1.61 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › BREX_BrxC_helical | 0.57 | 39.0 | 3.52e-01 | 70.3% | 56.2% |
| 4985660 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.57 | 40.0 | 2.96e-01 | 95.9% | 27.1% |
| 4958049 | 4204.1.1.5 ↗ | alpha bundles › AF0941-like › AF0941-like › AF0941-like › DUF2150 | 0.57 | 49.0 | 4.38e-01 | 100.0% | 79.1% |
| 4623986 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.57 | 41.0 | 2.89e-01 | 77.0% | 23.6% |
| 3229748 | 1134.1.1.9 ↗ | alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain › RSLD_CPSF6 | 0.57 | 43.0 | 4.19e-01 | 98.6% | 74.1% |
| 2075049 | 3787.1.1.0 ↗ | alpha bundles › HAD superfamily helical bundle insertion domain | 0.56 | 37.0 | 3.62e-01 | 70.3% | 100.0% |
| 4960347 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.55 | 37.0 | 3.46e-01 | 70.3% | 83.2% |
| 3958924 | 4033.1.1.0 ↗ | alpha arrays › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like | 0.55 | 40.0 | 3.84e-01 | 89.2% | 65.6% |
| 3423943 | 1128.1.1.2 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR_2 | 0.53 | 34.0 | 3.33e-01 | 82.4% | 57.5% |
| 3403227 | 192.8.1.465 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › CHD5 | 0.52 | 36.0 | 3.24e-01 | 87.8% | 49.1% |
| 4960526 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.52 | 41.0 | 4.00e-01 | 85.1% | 93.8% |
| 3526105 | 604.3.1.18 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › PF27519 | 0.52 | 41.0 | 3.87e-01 | 87.8% | 72.2% |
| 3770066 | 3291.1.1.169 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › KIF21A_4th | 0.52 | 38.0 | 2.86e-01 | 86.5% | 29.7% |
| 3995535 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.51 | 36.0 | 3.58e-01 | 100.0% | 70.0% |
| 5005257 | 2.21.1.0 ↗ | beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) | 0.51 | 37.0 | 2.91e-01 | 77.0% | 82.9% |
| 3352169 | 109.4.1.1296 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2, PPR_long, TPR_24 | 0.51 | 36.0 | 2.62e-01 | 100.0% | 24.3% |