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p10
Euk-VirBeet_pseudoyellows_virus
p10__NP_940791__Beet_pseudoyellows_virus__72750
Identity
- Accession:
- NP_940791 ↗
- Protein ID:
- p10
- Kingdom:
- euk
Quality
73.9
mean pLDDT
Taxonomy
Orthornavirae›
Kitrinoviricota›
Alsuviricetes›
Martellivirales›
Closteroviridae›
Crinivirus›
Beet_pseudoyellows_virus
TaxID: 72750
Cluster
View cluster (9 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-80
Domain cluster:
rep: unnamed_protein_product__YP_003002361__Lettuce_chlorosis_virus__642478__D3-73
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4l8jA04 | 1.10.287.470 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.65 | 38.0 | 4.25e-01 | 79.5% | 76.3% |
| 1vf7A03 | 1.10.287.470 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.58 | 38.0 | 4.20e-01 | 74.4% | 86.7% |
| 3purA03 | 1.20.58.1360 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.58 | 45.0 | 4.03e-01 | 83.3% | 70.0% |
| 2a3vB01 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.58 | 49.0 | 4.62e-01 | 97.4% | 77.7% |
| 3terA00 | 1.10.287.3550 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.57 | 39.0 | 3.43e-01 | 74.4% | 47.1% |
| 2oo2A00 | 1.20.1270.90 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like | 0.55 | 31.0 | 3.22e-01 | 83.3% | 55.3% |
| 3ckdA02 | 1.20.58.360 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Shigella T3SS effector IpaH defines | 0.53 | 36.0 | 3.10e-01 | 70.5% | 44.4% |
| 6qpqB00 | 1.10.10.580 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E | 0.53 | 42.0 | 4.17e-01 | 87.2% | 93.8% |
| 3w6zA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.52 | 43.0 | 3.79e-01 | 92.3% | 88.4% |
| 3keyA01 | 1.10.10.1080 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Stn1, N-terminal wHTH domain | 0.51 | 35.0 | 3.40e-01 | 97.4% | 64.4% |
| 2cazD00 | 6.10.140.820 | Special › Helix non-globular › Helix Hairpins › | 0.50 | 34.0 | 3.67e-01 | 75.6% | 91.7% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4025391 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.67 | 39.0 | 3.83e-01 | 74.4% | 52.9% |
| 3528233 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.66 | 51.0 | 5.22e-01 | 100.0% | 88.0% |
| 3009331 | 4044.1.1.1 ↗ | alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Prismane | 0.64 | 39.0 | 3.85e-01 | 71.8% | 57.8% |
| 2526355 | 7094.1.1.2 ↗ | alpha bundles › Paddle domain of mitochondrial dynamin › Paddle domain of mitochondrial dynamin › Paddle domain of mitochondrial dynamin › LIS_MGM1 | 0.61 | 44.0 | 4.06e-01 | 78.2% | 75.2% |
| 4789617 | 5054.1.1.8 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 | 0.58 | 42.0 | 3.92e-01 | 74.4% | 93.6% |
| 4024098 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.57 | 43.0 | 4.11e-01 | 80.8% | 88.9% |
| 3926959 | 605.6.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › HP1531-like › HP1531-like | 0.55 | 43.0 | 4.22e-01 | 87.2% | 77.6% |
| 4336666 | 3525.1.1.3 ↗ | alpha arrays › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › FAM199X | 0.54 | 33.0 | 3.42e-01 | 74.4% | 65.3% |
| 3959985 | 633.6.1.0 ↗ | alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like | 0.53 | 41.0 | 3.38e-01 | 83.3% | 84.1% |
| 4252455 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 44.0 | 4.17e-01 | 93.6% | 88.4% |
| 3714692 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.52 | 37.0 | 2.38e-01 | 74.4% | 17.6% |
| 3591633 | 1021.1.1.0 ↗ | a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases | 0.51 | 37.0 | 3.38e-01 | 83.3% | 55.5% |
| 3303197 | 904.1.1.0 ↗ | few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain | 0.50 | 35.0 | 3.36e-01 | 74.4% | 66.3% |