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p10

Euk-Vir

Malus_domestica_virus_A

p10__YP_010087861__Malus_domestica_virus_A__2664236

Identity

Accession:
YP_010087861 ↗
Protein ID:
p10
Kingdom:
euk

Quality

70.6 mean pLDDT

Taxonomy

Orthornavirae› Kitrinoviricota› Alsuviricetes› Martellivirales› Closteroviridae› Velarivirus› Malus_domestica_virus_A

TaxID: 2664236

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-10_26-77
PDB
Domain cluster: rep: p6__YP_009507954__Diodia_vein_chlorosis_virus__656520__D4-52
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qi2A02 3.30.420.60 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 0.63 45.0 3.72e-01 77.4% 95.6%
4ijaB02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.61 46.0 3.49e-01 82.3% 98.7%
3w4sA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.60 45.0 3.01e-01 82.3% 90.1%
3umoA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.60 44.0 2.89e-01 82.3% 92.9%
1c44A00 3.30.1050.10 Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › SCP2 sterol-binding domain 0.60 48.0 3.85e-01 88.7% 91.1%
2yb1A01 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.58 44.0 3.10e-01 83.9% 40.8%
2wiqA00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.58 42.0 2.90e-01 77.4% 90.2%
2qh9A00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.57 40.0 2.89e-01 72.6% 89.9%
1uisA00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.57 41.0 2.79e-01 75.8% 90.6%
4dkmA00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.57 42.0 2.90e-01 77.4% 94.8%
2nbmA00 3.30.1050.10 Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › SCP2 sterol-binding domain 0.57 46.0 3.82e-01 88.7% 89.2%
3lq9A00 3.90.470.40 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › RTP801-like 0.57 41.0 3.40e-01 80.6% 81.2%
3teeA02 2.30.30.760 Mainly Beta › Roll › SH3 type barrels. › 0.56 33.0 3.18e-01 83.9% 49.3%
3ssoA01 3.30.1050.30 Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › 0.56 45.0 3.46e-01 91.9% 98.7%
3ai4A00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.56 40.0 2.71e-01 77.4% 80.9%
3i9xA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.55 41.0 3.18e-01 83.9% 77.7%
3hrgA02 3.30.420.260 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF3822, C-terminal domain 0.55 43.0 3.56e-01 87.1% 99.1%
1k28D04 3.30.1920.40 Alpha Beta › 2-Layer Sandwich › Phage tail proteins - 2 layer sandwich fold › 0.55 40.0 4.00e-01 82.3% 92.2%
4boqA00 3.90.70.80 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.54 40.0 2.92e-01 79.0% 39.4%
1e3mB02 3.30.420.110 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › MutS, connector domain 0.54 39.0 3.16e-01 83.9% 38.2%
1nmnA00 3.30.420.140 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain 0.51 38.0 3.17e-01 82.3% 45.8%
3sonA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.51 39.0 2.96e-01 82.3% 71.9%
4brcA02 3.30.420.150 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Exopolyphosphatase. Domain 2 0.51 37.0 2.56e-01 77.4% 99.1%
2c9jA00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.50 38.0 2.72e-01 85.5% 86.9%
2o1uB01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.50 37.0 2.82e-01 82.3% 89.7%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3973343 3071.1.1.0 ↗ a+b complex topology › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins 0.60 43.0 4.31e-01 79.0% 86.2%
3839929 3174.2.1.1 ↗ beta barrels › Ribosomal protein L14-like › Barrel domain in flagellar protein FlgA › Barrel domain in flagellar protein FlgA › ChapFlgA 0.58 35.0 3.52e-01 83.9% 58.7%
4937487 268.1.1.0 ↗ a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related 0.58 44.0 3.50e-01 82.3% 62.1%
3282413 268.1.1.5 ↗ a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related › MycE_N 0.58 47.0 3.61e-01 90.3% 97.2%
3990327 2484.1.1.205 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27035 0.58 43.0 3.30e-01 82.3% 97.4%
4537112 2484.1.1.31 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Glucokinase 0.57 42.0 3.27e-01 79.0% 87.9%
4290937 2484.1.1.48 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II 0.57 42.0 3.39e-01 83.9% 93.6%
4220379 268.1.1.5 ↗ a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related › MycE_N 0.57 46.0 3.54e-01 90.3% 97.2%
4963373 268.1.1.0 ↗ a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related 0.57 46.0 3.73e-01 87.1% 77.9%
4600425 2484.1.1.40 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX 0.57 40.0 3.11e-01 77.4% 88.4%
4238582 3174.2.1.1 ↗ beta barrels › Ribosomal protein L14-like › Barrel domain in flagellar protein FlgA › Barrel domain in flagellar protein FlgA › ChapFlgA 0.56 33.0 3.40e-01 83.9% 60.0%
None — 0.56 41.0 2.37e-01 83.9% 7.0%
427824 268.1.1.5 ↗ a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related › MycE_N 0.56 45.0 3.40e-01 90.3% 94.4%
3430671 1.1.11.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.56 41.0 3.22e-01 77.4% 72.0%
3329704 1.1.11.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.55 40.0 3.40e-01 77.4% 85.0%
3825581 1.1.11.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.55 40.0 3.29e-01 77.4% 79.8%
4984476 2003.6.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.54 40.0 2.70e-01 83.9% 91.7%
4949055 268.1.1.0 ↗ a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related 0.54 43.0 3.51e-01 87.1% 66.4%
3304067 1.1.11.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.54 39.0 3.34e-01 77.4% 85.9%
3793302 268.1.1.0 ↗ a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related 0.54 42.0 3.49e-01 88.7% 91.5%
4943214 896.1.1.0 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.53 38.0 3.69e-01 83.9% 70.0%
3970890 3174.2.1.1 ↗ beta barrels › Ribosomal protein L14-like › Barrel domain in flagellar protein FlgA › Barrel domain in flagellar protein FlgA › ChapFlgA 0.53 31.0 3.17e-01 83.9% 58.3%
4052507 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.52 35.0 3.04e-01 71.0% 94.7%