←Back to structures

p143

Euk-Vir

Lambdina_fiscellaria_nucleopolyhedrovirus

p143__YP_009133264__Lambdina_fiscellaria_nucleopolyhedrovirus__1642929

Identity

Accession:: YP_009133264 ↗
Protein ID:: p143
Kingdom:: euk

Quality

71.9 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Lambdina_fiscellaria_nucleopolyhedrovirus

TaxID: 1642929

Cluster

View cluster (45 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 131-233

PDB

Domain cluster: rep: helicase__YP_006607831__Apocheima_cinerarium_nucleopolyhedrovirus__307461__D33-112

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	70.7	7.90e-20	100.0%	8.6%

D2 medium residues 234-322

PDB

Domain cluster: rep: DNA_helicase__YP_009666413__Lonomia_obliqua_multiple_nucleopolyhedrovirus__134394__D195-285

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	72.6	2.10e-20	100.0%	6.1%

D3 medium residues 345-498

PDB

Domain cluster: rep: helicase_1__YP_009011148__Mamestra_brassicae_multiple_nucleopolyhedrovirus__78219__D300-447

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	64.9	4.50e-18	99.4%	12.2%

D4 medium residues 625-694_729-734_931-960

PDB

Domain cluster: rep: P143__YP_009116998__Pseudoplusia_includens_SNPV_IE__1592335__D559-634_819-841

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	37.1	1.10e-09	71.7%	5.9%
PF04735.17	Baculo_helicase	34.9	4.90e-09	35.9%	2.4%

D5 medium residues 735-833

PDB

Domain cluster: rep: DNA_helicase__YP_009505890__Spodoptera_littoralis_nucleopolyhedrovirus__10456__D726-834

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	25.2	4.20e-06	100.0%	7.6%

D6 medium residues 961-1006_1141-1194

PDB

Domain cluster: representative

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	64.9	4.40e-18	54.0%	4.0%
PF04735.17	Baculo_helicase	46.7	1.40e-12	47.0%	3.4%

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1ywmA02	1.20.1270.150	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Surface Active Protein	0.62	26.0	2.92e-01	74.0%	48.7%
5c8aA01	1.10.1240.10	Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain	0.53	30.0	3.36e-01	77.0%	71.8%
1c5aA00	1.20.91.20	Mainly Alpha › Up-down Bundle › Influenza Virus Matrix Protein; Chain A, domain 1 › Anaphylotoxins (complement system)	0.53	27.0	3.17e-01	85.0%	70.8%
4fp4A00	1.10.600.10	Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase	0.51	45.0	3.46e-01	100.0%	62.6%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3940457	179.1.1.1 ↗	alpha bundles › CO dehydrogenase ISP C-domain like › CO dehydrogenase ISP C-domain like › CO dehydrogenase ISP C-domain like › Fer2_2	0.53	31.0	3.52e-01	99.0%	77.3%
3452232	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.52	33.0	2.65e-01	100.0%	30.2%

D7 medium residues 1007-1140

PDB

Domain cluster: rep: MN062720.1__QDP45567.1__SEA_FUZZBUSTER_83__00083__D568-722_747-764

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	144.6	3.80e-42	100.0%	10.3%

D8 medium residues 1208-1298

PDB

Domain cluster: rep: helicase__YP_009552640__Operophtera_brumata_nucleopolyhedrovirus__1046267__D1095-1177

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	42.4	2.70e-11	100.0%	8.0%