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p18

Euk-Vir

Carnation_yellow_fleck_virus

p18__YP_008858538__Carnation_yellow_fleck_virus__940280

Identity

Accession:
YP_008858538 ↗
Protein ID:
p18
Kingdom:
euk

Quality

77.9 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-90
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF11757.14 best RSS_P20 65.0 9.60e-18 100.0% 89.4%
CATH (67)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2cwoA01 1.20.58.1200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › RNA silencing suppressor P21, N-terminal domain 0.95 78.0 8.29e-01 97.6% 95.9%
4aflA00 6.10.140.1740 Special › Helix non-globular › Helix Hairpins › 0.88 61.0 5.69e-01 71.4% 60.8%
4abmD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.87 60.0 6.24e-01 71.4% 76.6%
3l39A01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.80 72.0 5.42e-01 100.0% 47.0%
3r6nB01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.80 73.0 5.26e-01 100.0% 42.0%
3r84B00 6.10.280.160 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Mediator of RNA polymerase II transcription subunit 22 0.79 54.0 5.59e-01 70.2% 73.8%
3edvB01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.79 73.0 6.12e-01 100.0% 68.4%
1br0A00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.79 71.0 6.30e-01 100.0% 87.5%
3ck6C02 1.20.58.340 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region 0.78 71.0 6.30e-01 100.0% 78.2%
3n2oA03 1.20.58.930 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.78 60.0 5.73e-01 96.4% 70.8%
4hr1A00 1.20.1270.410 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.78 54.0 4.77e-01 72.6% 50.8%
3nvoB02 1.20.58.340 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region 0.78 71.0 6.35e-01 100.0% 82.8%
2dnxA00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.78 70.0 6.03e-01 100.0% 75.4%
3anwA01 1.20.58.1030 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.77 56.0 5.05e-01 76.2% 68.1%
5nl6B01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.77 69.0 6.09e-01 100.0% 83.5%
3l8rA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.77 69.0 6.47e-01 100.0% 85.3%
1s35A01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.77 71.0 6.63e-01 100.0% 92.1%
1zpyA00 6.10.140.1960 Special › Helix non-globular › Helix Hairpins › 0.77 50.0 4.92e-01 75.0% 61.5%
2odmA00 1.10.287.750 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › SO2669-like 0.77 59.0 6.06e-01 97.6% 86.1%
2i0mA02 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.76 69.0 6.49e-01 100.0% 83.2%
1vcsA00 1.20.58.400 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins 0.76 70.0 6.54e-01 100.0% 83.3%
1wcrA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.75 68.0 6.34e-01 100.0% 85.4%
1uurA01 1.20.58.240 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › STAT; domain 1 0.75 67.0 6.14e-01 98.8% 88.2%
4iu9B02 1.20.1250.20 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains 0.75 60.0 4.42e-01 84.5% 60.1%
3onjA00 1.20.58.400 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins 0.75 68.0 6.51e-01 100.0% 90.7%
5j1hA01 1.20.58.1060 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.75 67.0 5.21e-01 100.0% 49.5%
1m62A00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.75 62.0 6.20e-01 100.0% 86.2%
4w4kA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.75 51.0 5.17e-01 70.2% 73.2%
1dn1B00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.74 66.0 4.84e-01 98.8% 66.7%
2xq9A02 1.20.58.390 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Neurotransmitter-gated ion-channel transmembrane domain 0.74 61.0 5.34e-01 100.0% 61.2%
2yksA02 1.20.58.390 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Neurotransmitter-gated ion-channel transmembrane domain 0.73 61.0 5.43e-01 100.0% 64.1%
2yfaA02 1.20.1440.210 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.73 61.0 5.46e-01 100.0% 65.5%
2h7oA01 1.20.120.1330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Rac1-binding domain, N-terminal GTPase binding subdomain 0.72 54.0 4.76e-01 100.0% 54.5%
2odvA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.72 65.0 5.87e-01 100.0% 86.6%
3pe0A02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.72 65.0 6.04e-01 100.0% 85.8%
7dl9A01 1.20.1250.20 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains 0.72 56.0 4.28e-01 84.5% 70.1%
6a95A01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.71 62.0 5.33e-01 92.9% 74.6%
2f2gA00 1.20.910.10 Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like 0.70 50.0 3.71e-01 78.6% 29.3%
2pfdA03 1.20.120.680 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Formiminotetrahydrofolate cyclodeaminase monomer, up-and-down helical bundle 0.70 62.0 4.71e-01 100.0% 42.9%
7tj9A01 1.20.120.350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C 0.70 63.0 5.80e-01 96.4% 84.9%
3r2qA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.69 62.0 5.62e-01 98.8% 73.5%
6xz3A01 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.69 64.0 5.64e-01 100.0% 73.5%
2oyhA00 1.20.5.50 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.69 44.0 4.92e-01 70.2% 85.9%
1u7lA02 1.20.1460.10 Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › subunit c (vma5p) of the yeast v-atpase, domain 2 0.68 51.0 3.93e-01 78.6% 92.9%
3swhA01 1.10.357.50 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › 0.67 59.0 4.77e-01 100.0% 67.9%
4l8iB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.66 59.0 5.39e-01 100.0% 89.3%
3l1nA02 1.20.1280.140 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.66 56.0 5.55e-01 97.6% 92.0%
1qlbA03 1.20.58.100 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain 0.65 55.0 4.95e-01 100.0% 66.1%
3qc1A01 1.25.40.540 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › TAP42-like family 0.65 57.0 4.71e-01 98.8% 54.3%
6i3mE01 1.20.120.420 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 0.65 48.0 4.02e-01 77.4% 52.6%
3purA03 1.20.58.1360 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 57.0 5.20e-01 98.8% 74.5%
6jpaE00 1.20.140.150 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › 0.61 54.0 4.32e-01 100.0% 52.1%
3o2tA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.59 52.0 3.58e-01 100.0% 33.6%
6d5xA00 1.20.1200.10 Mainly Alpha › Up-down Bundle › Hypothetical Protein Ta1238; Chain: A; › Cobalamin adenosyltransferase-like 0.59 53.0 4.35e-01 100.0% 62.9%
4finB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 40.0 2.87e-01 77.4% 22.4%
4i1eA03 1.25.10.30 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › IP3 receptor type 1 binding core, RIH domain 0.57 50.0 4.31e-01 100.0% 70.5%
1kgqA01 1.10.166.10 Mainly Alpha › Orthogonal Bundle › Tetrahydrodipicolinate-N-succinyltransferase; Chain A, domain 1 › Tetrahydrodipicolinate-N-succinyltransferase, N-terminal domain 0.57 43.0 4.64e-01 95.2% 98.6%
1e6cA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 44.0 3.45e-01 81.0% 88.2%
5dkoA02 1.10.3900.10 Mainly Alpha › Orthogonal Bundle › YacF-like › YacF-like 0.55 49.0 3.91e-01 98.8% 86.2%
2x1dA02 1.10.10.2120 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.55 35.0 3.72e-01 82.1% 73.0%
1w0bA01 1.20.58.420 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP 0.55 46.0 4.54e-01 100.0% 88.0%
1cpcB00 1.10.490.20 Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins 0.55 46.0 3.77e-01 98.8% 76.7%
2iw3A02 1.20.1390.20 Mainly Alpha › Up-down Bundle › PWI domain › 0.54 35.0 3.43e-01 95.2% 61.1%
1ldjA01 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.54 46.0 4.10e-01 100.0% 96.8%
4hehA01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.53 43.0 4.41e-01 100.0% 91.6%
4bpxD00 1.20.930.80 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › 0.51 44.0 3.34e-01 98.8% 40.8%
6f1eA01 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.50 46.0 3.82e-01 98.8% 61.2%
ECOD (85)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3829240 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.94 65.0 5.64e-01 71.4% 50.8%
223713 604.19.1.1 alpha bundles › Spectrin repeat-like › RNA silencing suppressor p21 N-terminal domain › RNA silencing suppressor p21 N-terminal domain › RSS_P20 0.94 78.0 8.02e-01 100.0% 90.1%
4567957 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.86 80.0 7.12e-01 100.0% 80.9%
3172910 603.1.1.99 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF27021 0.84 78.0 7.21e-01 100.0% 85.7%
4608674 4121.1.1.0 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.84 77.0 5.57e-01 100.0% 45.0%
3171100 603.1.1.100 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF27017 0.83 76.0 7.15e-01 98.8% 90.0%
3254975 603.2.1.2 alpha bundles › STAT-like › STAT › STAT › Dict-STAT-coil 0.83 77.0 6.82e-01 100.0% 79.1%
3514718 604.1.1.1 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.83 76.0 6.81e-01 100.0% 87.8%
3704359 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.83 76.0 5.89e-01 100.0% 55.4%
3830963 603.1.1.100 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF27017 0.82 77.0 6.70e-01 100.0% 79.2%
3713159 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.82 76.0 6.66e-01 100.0% 80.8%
4955536 4121.1.1.1 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA 0.82 77.0 5.50e-01 100.0% 45.5%
3609374 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.82 75.0 6.84e-01 100.0% 85.5%
3266118 603.1.1.100 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF27017 0.82 76.0 6.56e-01 100.0% 72.8%
3581267 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.82 75.0 7.38e-01 100.0% 92.2%
3367913 603.1.1.1 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin 0.81 75.0 6.22e-01 100.0% 76.4%
3887311 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.81 75.0 5.09e-01 100.0% 34.2%
3488291 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.80 74.0 6.82e-01 100.0% 88.6%
3481122 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.80 73.0 6.86e-01 100.0% 93.0%
3920337 604.1.1.142 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin_SYNE1_2 0.80 73.0 6.53e-01 100.0% 80.0%
3907213 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.79 73.0 6.90e-01 100.0% 92.0%
3441715 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.79 72.0 6.56e-01 100.0% 85.5%
3582234 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.78 67.0 6.30e-01 100.0% 77.0%
3912433 603.1.1.5 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin-6_N 0.78 71.0 6.05e-01 100.0% 73.3%
3245543 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.78 72.0 6.76e-01 100.0% 84.0%
4310587 109.4.1.317 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Med5 0.78 70.0 5.48e-01 98.8% 59.4%
3563679 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.78 72.0 6.65e-01 100.0% 81.9%
4944005 604.3.1.0 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.78 70.0 6.91e-01 100.0% 97.8%
3580347 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.78 70.0 6.53e-01 100.0% 86.7%
3648942 604.6.1.0 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.78 70.0 5.70e-01 100.0% 85.2%
3268806 603.1.1.5 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin-6_N 0.77 70.0 6.12e-01 100.0% 83.2%
3262638 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.77 70.0 6.51e-01 100.0% 85.7%
3792010 604.1.1.105 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin_Anc-1_2 0.77 70.0 6.51e-01 100.0% 80.0%
4942736 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.77 68.0 6.32e-01 97.6% 90.5%
3583890 603.1.1.3 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › V-SNARE 0.76 70.0 5.76e-01 100.0% 61.4%
4025201 604.5.1.0 alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) 0.76 69.0 6.28e-01 100.0% 85.5%
3703494 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.76 68.0 6.25e-01 100.0% 79.1%
3697586 603.1.1.5 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin-6_N 0.76 68.0 5.40e-01 100.0% 60.6%
3800823 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.76 69.0 6.40e-01 100.0% 80.0%
4028818 603.1.1.17 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › SNARE 0.76 69.0 5.05e-01 98.8% 62.9%
3795 603.2.1.2 alpha bundles › STAT-like › STAT › STAT › Dict-STAT-coil 0.75 68.0 6.05e-01 100.0% 83.9%
3955621 603.5.1.33 alpha bundles › STAT-like › FlgN-like › FlgN-like › SLAC1 0.75 67.0 5.51e-01 100.0% 61.9%
3581259 604.6.1.0 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.75 69.0 6.74e-01 100.0% 93.3%
4402843 604.1.1.20 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › AKNA 0.75 67.0 6.04e-01 100.0% 85.2%
4992256 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.75 67.0 6.36e-01 100.0% 87.9%
3262164 4121.1.1.1 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA 0.74 66.0 4.65e-01 98.8% 38.8%
3486085 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.74 67.0 5.93e-01 100.0% 85.0%
3634960 603.1.1.5 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin-6_N 0.74 66.0 6.04e-01 100.0% 90.0%
3459951 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.74 68.0 6.17e-01 100.0% 92.7%
3685754 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.73 64.0 4.17e-01 100.0% 21.9%
3471924 603.1.1.105 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF31021 0.73 67.0 6.20e-01 100.0% 92.4%
3915114 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.72 64.0 5.57e-01 100.0% 81.5%
3935027 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.71 65.0 6.10e-01 100.0% 87.0%
3527227 101.1.11.0 alpha arrays › HTH › HTH › Ribbon-helix-helix 0.71 59.0 5.46e-01 94.0% 71.4%
4949854 601.18.1.0 alpha bundles › Four-helical up-and-down bundle › Oxygen-evolving enhancer protein 3 › Oxygen-evolving enhancer protein 3 0.71 57.0 5.13e-01 95.2% 62.8%
3992995 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.71 64.0 6.01e-01 100.0% 83.5%
3756738 5050.1.1.10 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_2 0.71 48.0 3.59e-01 70.2% 55.8%
3242228 192.5.1.0 alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat 0.71 61.0 5.46e-01 96.4% 92.5%
3483986 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.70 62.0 6.03e-01 100.0% 93.7%
3245544 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.70 62.0 5.64e-01 100.0% 76.5%
3624507 604.1.1.1 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.70 63.0 5.68e-01 100.0% 79.1%
3598647 632.19.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A 0.70 48.0 4.83e-01 71.4% 70.6%
3635930 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.69 63.0 5.11e-01 100.0% 60.6%
3180119 604.5.1.0 alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) 0.69 57.0 5.73e-01 91.7% 97.6%
3622960 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.69 63.0 5.39e-01 100.0% 76.2%
3723690 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.69 62.0 5.43e-01 100.0% 75.2%
4371144 3560.1.1.1 a+b complex topology › Mediator of RNA polymerase II transcription subunit 8 › Mediator of RNA polymerase II transcription subunit 8 › Mediator of RNA polymerase II transcription subunit 8 › Med8 0.69 58.0 4.52e-01 90.5% 54.7%
3613157 632.19.1.6 alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A › PF27508 0.68 49.0 4.91e-01 73.8% 74.1%
3486497 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.67 61.0 5.27e-01 100.0% 69.2%
4944283 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.67 60.0 5.05e-01 100.0% 71.4%
3474500 632.7.1.25 alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › PF27508 0.66 46.0 4.60e-01 71.4% 71.8%
4000290 192.29.1.188 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › F_actin_bind 0.65 59.0 5.10e-01 100.0% 81.5%
3713792 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.65 55.0 5.20e-01 100.0% 78.1%
4476660 192.8.1.478 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › BAG6 0.64 54.0 4.72e-01 90.5% 71.2%
3205696 310.2.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.64 56.0 4.84e-01 100.0% 77.0%
3863657 192.29.1.26 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › BAG6 0.63 53.0 4.72e-01 90.5% 75.7%
3486453 310.2.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.63 56.0 5.21e-01 100.0% 84.8%
4243427 3560.1.1.1 a+b complex topology › Mediator of RNA polymerase II transcription subunit 8 › Mediator of RNA polymerase II transcription subunit 8 › Mediator of RNA polymerase II transcription subunit 8 › Med8 0.62 49.0 4.00e-01 86.9% 53.8%
3833252 4106.1.1.0 few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack 0.61 52.0 4.37e-01 94.0% 70.3%
3924758 4967.1.1.0 alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases 0.60 35.0 3.60e-01 70.2% 58.7%
3514942 4967.1.1.0 alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases 0.55 36.0 3.43e-01 100.0% 57.9%
4530490 3455.1.1.0 alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors 0.55 45.0 4.46e-01 91.7% 83.3%
4984545 601.7.1.0 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.52 43.0 4.21e-01 90.5% 92.2%
3497021 3651.1.1.1 alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › IF-2B 0.51 40.0 3.77e-01 97.6% 67.6%
5081092 601.7.1.2 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HEPN 0.50 43.0 3.83e-01 96.4% 90.2%
D2 high residues 101-172
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF11479.14 best Suppressor_P21 101.9 2.50e-29 100.0% 88.8%
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2cwoA02 1.10.1200.170 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › RNA silencing suppressor P21, C-terminal domain 0.86 81.0 7.63e-01 100.0% 90.4%
2gicD02 1.10.3610.10 Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like › Nucleoprotein 0.63 45.0 3.27e-01 73.6% 46.7%
7qv0F01 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.62 46.0 4.44e-01 77.8% 98.8%
1a41A02 1.20.120.380 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2 0.62 49.0 4.52e-01 95.8% 67.0%
1l3pA00 1.20.120.320 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Group V grass pollen allergen 0.60 49.0 4.41e-01 91.7% 70.6%
1mkiA02 1.10.1500.10 Mainly Alpha › Orthogonal Bundle › Probable Glutaminase Ybgj; Chain: A, domain 2 › 0.59 48.0 3.91e-01 90.3% 91.3%
3aq5A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.58 44.0 3.84e-01 84.7% 86.3%
2cgqA00 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.57 39.0 3.89e-01 70.8% 77.0%
3um7A03 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.57 43.0 3.93e-01 84.7% 67.0%
2f8lA01 1.10.150.470 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.56 49.0 4.72e-01 100.0% 86.4%
3ousA00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.56 43.0 4.21e-01 84.7% 79.3%
5xs2B02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.55 42.0 3.58e-01 86.1% 66.7%
4fxdA04 3.90.1600.10 Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain 0.54 41.0 3.31e-01 84.7% 79.1%
2i53A01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.54 41.0 3.46e-01 87.5% 58.7%
1ctfA00 3.30.1390.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L7/L12, C-terminal domain/Adaptor protein ClpS 0.53 38.0 3.93e-01 80.6% 79.4%
5dvwA00 1.20.120.1160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.53 36.0 3.00e-01 98.6% 37.9%
7w5lA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.53 36.0 2.53e-01 70.8% 61.0%
1lzwA00 3.30.1390.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L7/L12, C-terminal domain/Adaptor protein ClpS 0.52 37.0 3.42e-01 73.6% 71.4%
1t0fA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 44.0 4.05e-01 100.0% 71.7%
3gz5B02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 41.0 4.10e-01 95.8% 85.1%
1c9bA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.51 39.0 3.59e-01 84.7% 77.3%
2w02B01 1.10.150.640 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › AcsD, thumb domain, helical bundle 0.51 41.0 4.15e-01 97.2% 87.8%
3otdA00 3.30.70.3000 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) 0.51 44.0 3.09e-01 98.6% 50.0%
7p2yd01 1.10.520.20 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › N-terminal domain of the delta subunit of the F1F0-ATP synthase 0.50 42.0 3.87e-01 95.8% 92.9%
1rp5A03 3.30.70.2110 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 34.0 3.25e-01 87.5% 57.8%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
223714 3580.1.1.1 alpha arrays › RNA silencing suppressor p21 C-terminal domain › RNA silencing suppressor p21 C-terminal domain › RNA silencing suppressor p21 C-terminal domain › Suppressor_P21 0.86 81.0 7.60e-01 100.0% 89.3%
3340355 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.64 43.0 4.41e-01 88.9% 71.4%
3883414 101.1.1.228 alpha arrays › HTH › HTH › Three-helical HTH › Eaf7 0.62 45.0 4.76e-01 88.9% 84.6%
4011395 186.1.1.0 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.61 50.0 4.59e-01 97.2% 69.0%
3371467 101.1.1.214 alpha arrays › HTH › HTH › Three-helical HTH › DUF7026 0.60 50.0 4.67e-01 95.8% 74.4%
3462581 101.1.10.1 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.58 43.0 3.34e-01 80.6% 47.3%
2890674 132.1.1.1 alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding 0.58 42.0 3.79e-01 77.8% 85.1%
3587994 3962.1.1.0 alpha arrays › N-terminal helical domain in restriction-modification system methylation subunit-like › N-terminal helical domain in restriction-modification system methylation subunit › N-terminal helical domain in restriction-modification system methylation subunit 0.58 49.0 4.97e-01 97.2% 95.7%
4937154 102.3.1.0 alpha arrays › HhH/H2TH › eIF2alpha middle domain › eIF2alpha middle domain 0.57 41.0 3.88e-01 75.0% 88.2%
4934097 102.3.1.0 alpha arrays › HhH/H2TH › eIF2alpha middle domain › eIF2alpha middle domain 0.57 39.0 3.75e-01 72.2% 87.1%
5076808 601.7.1.0 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.54 42.0 3.70e-01 86.1% 85.2%
5013034 5054.1.1.8 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 0.54 42.0 3.94e-01 84.7% 72.2%
3722075 7524.1.1.1 a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › Aldedh 0.53 41.0 2.76e-01 83.3% 91.4%
3963900 3018.1.1.1 a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › TilS 0.53 36.0 3.48e-01 77.8% 60.0%
3608411 7111.1.1.0 alpha bundles › Ubiquinol-cytochrome C chaperone, C-terminal domain › Ubiquinol-cytochrome C chaperone, C-terminal domain › Ubiquinol-cytochrome C chaperone, C-terminal domain 0.52 44.0 3.33e-01 97.2% 37.9%
3799156 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.52 34.0 3.46e-01 73.6% 66.2%
3728038 7524.1.1.1 a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › Aldedh 0.51 39.0 2.94e-01 81.9% 50.6%
3772694 627.1.1.1 alpha complex topology › VPS9 domain › VPS9 domain › VPS9 domain › VPS9 0.51 42.0 3.24e-01 93.1% 41.8%
3901999 627.1.1.1 alpha complex topology › VPS9 domain › VPS9 domain › VPS9 domain › VPS9 0.50 42.0 3.32e-01 97.2% 80.0%