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p24
Euk-VirTea_plant_necrotic_ring_blotch_virus
p24__YP_009551528__Tea_plant_necrotic_ring_blotch_virus__2419939
Identity
- Accession:
- YP_009551528 ↗
- Protein ID:
- p24
- Kingdom:
- euk
Quality
75.6
mean pLDDT
Taxonomy
Orthornavirae›
Kitrinoviricota›
Alsuviricetes›
Martellivirales›
Kitaviridae›
Blunervirus›
Tea_plant_necrotic_ring_blotch_virus
TaxID: 2419939
Cluster
View cluster (34 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 56-180
Domain cluster:
rep: hypothetical_protein__YP_009333206__Beihai_anemone_virus_1__1922352__D65-182
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF16504.11 best | SP24 | 105.2 | 4.20e-30 | 98.4% | 87.1% |
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1m5iA00 | 1.10.287.450 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.73 | 32.0 | 3.55e-01 | 85.6% | 51.4% |
| 6qumA04 | 1.10.1140.10 | Mainly Alpha › Orthogonal Bundle › Bovine Mitochondrial F1-ATPase, ATP Synthase Beta Chain; Chain D, domain3 › Bovine Mitochondrial F1-atpase; Atp Synthase Beta Chain; Chain D, domain 3 | 0.57 | 43.0 | 4.10e-01 | 80.0% | 75.2% |
| 1nlxA00 | 1.20.120.320 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Group V grass pollen allergen | 0.56 | 41.0 | 4.39e-01 | 92.0% | 90.4% |
| 8sbeA02 | 1.20.1250.20 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains | 0.53 | 39.0 | 3.38e-01 | 76.0% | 62.6% |
| 7utzR02 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.51 | 45.0 | 3.58e-01 | 100.0% | 71.4% |
| 1sxjE03 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.51 | 36.0 | 3.93e-01 | 77.6% | 93.8% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4117520 | 1075.4.1.10 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane+CFTR_R | 0.61 | 56.0 | 3.46e-01 | 100.0% | 65.4% |
| 3385849 | 1075.5.1.2 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › MurJ | 0.60 | 47.0 | 4.02e-01 | 83.2% | 60.5% |
| 4928991 | 4207.1.2.0 ↗ | alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › MED7 hinge region | 0.59 | 41.0 | 3.29e-01 | 72.0% | 89.0% |
| 4968636 | 5069.1.3.0 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits | 0.57 | 40.0 | 3.59e-01 | 71.2% | 85.3% |
| 3990437 | 101.1.10.9 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin | 0.56 | 42.0 | 3.81e-01 | 90.4% | 56.6% |
| 3308070 | 1075.1.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane | 0.56 | 43.0 | 3.41e-01 | 82.4% | 70.3% |
| 3423721 | 207.1.1.97 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_RPS2 | 0.53 | 45.0 | 2.87e-01 | 95.2% | 25.8% |
| 3421334 | 3567.1.1.0 ↗ | a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer | 0.52 | 45.0 | 3.72e-01 | 97.6% | 78.8% |
| 3785333 | 5001.1.1.64 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › PalH | 0.52 | 46.0 | 3.62e-01 | 97.6% | 69.1% |
| 3178339 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.51 | 39.0 | 3.24e-01 | 81.6% | 52.9% |
| 3613978 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.51 | 45.0 | 3.55e-01 | 100.0% | 61.8% |