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p26
Euk-VirBeet_pseudoyellows_virus
p26__NP_940794__Beet_pseudoyellows_virus__72750
Identity
- Accession:
- NP_940794 ↗
- Protein ID:
- p26
- Kingdom:
- euk
Quality
81.4
mean pLDDT
Taxonomy
Orthornavirae›
Kitrinoviricota›
Alsuviricetes›
Martellivirales›
Closteroviridae›
Crinivirus›
Beet_pseudoyellows_virus
TaxID: 72750
Cluster
View cluster (11 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 16-117
Domain cluster:
rep: p28__YP_009507959__Diodia_vein_chlorosis_virus__656520__D20-131
CATH (34)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4wzxA01 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.75 | 48.0 | 5.44e-01 | 98.0% | 88.0% |
| 1rz4A01 | 1.25.40.250 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › ARM repeat; domain 1 | 0.72 | 41.0 | 3.87e-01 | 97.1% | 46.7% |
| 1yxrA01 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.71 | 44.0 | 5.06e-01 | 94.1% | 86.5% |
| 2rkkA01 | 1.25.40.270 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Vacuolar protein sorting-associated protein vta1 | 0.70 | 50.0 | 4.35e-01 | 100.0% | 48.7% |
| 2bvlA01 | 1.20.58.1190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.69 | 43.0 | 4.63e-01 | 95.1% | 73.3% |
| 4aifA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.68 | 44.0 | 3.91e-01 | 96.1% | 45.8% |
| 3iqcA00 | 1.20.120.340 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS | 0.67 | 49.0 | 4.63e-01 | 100.0% | 64.7% |
| 5j1hA01 | 1.20.58.1060 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.63 | 47.0 | 3.86e-01 | 100.0% | 43.4% |
| 1orsC00 | 1.20.120.350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C | 0.62 | 46.0 | 4.23e-01 | 100.0% | 60.6% |
| 3mq1A01 | 1.20.58.970 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.61 | 49.0 | 5.21e-01 | 97.1% | 94.6% |
| 4u7iA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.61 | 46.0 | 4.78e-01 | 100.0% | 88.2% |
| 1t72A01 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.60 | 50.0 | 4.82e-01 | 100.0% | 77.8% |
| 1yo7A00 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.60 | 46.0 | 4.34e-01 | 100.0% | 69.2% |
| 2odmA00 | 1.10.287.750 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › SO2669-like | 0.59 | 42.0 | 4.64e-01 | 99.0% | 94.9% |
| 1xzpA02 | 1.20.120.430 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › tRNA modification GTPase MnmE domain 2 | 0.59 | 49.0 | 4.16e-01 | 100.0% | 55.4% |
| 3ubkB02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.59 | 40.0 | 3.82e-01 | 100.0% | 57.6% |
| 5nl6B01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.58 | 54.0 | 5.06e-01 | 100.0% | 83.5% |
| 4g80T00 | 1.20.120.350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C | 0.57 | 46.0 | 4.19e-01 | 100.0% | 64.0% |
| 2vvyA01 | 1.10.437.20 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › dsDNA poxvirus | 0.57 | 33.0 | 3.04e-01 | 85.3% | 42.5% |
| 2pmvA01 | 1.50.10.20 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.56 | 44.0 | 3.25e-01 | 83.3% | 56.1% |
| 1cgnA00 | 1.20.120.10 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562 | 0.56 | 46.0 | 4.36e-01 | 100.0% | 73.4% |
| 3rq9A00 | 1.10.287.2500 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.56 | 38.0 | 4.28e-01 | 96.1% | 92.3% |
| 2gsqA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.56 | 46.0 | 4.55e-01 | 100.0% | 83.3% |
| 1d1dA01 | 1.10.375.10 | Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein | 0.56 | 36.0 | 3.23e-01 | 86.3% | 47.1% |
| 1hp8A00 | 1.10.287.1130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › CytochromE C oxidase copper chaperone | 0.55 | 34.0 | 3.90e-01 | 97.1% | 89.7% |
| 7k18A01 | 1.20.120.350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C | 0.55 | 48.0 | 4.36e-01 | 99.0% | 70.9% |
| 7tzoA01 | 1.10.1070.11 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › Phosphatidylinositol 3-/4-kinase, catalytic domain | 0.54 | 43.0 | 3.65e-01 | 100.0% | 50.6% |
| 8a0rA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.54 | 40.0 | 3.75e-01 | 100.0% | 63.1% |
| 3rkgA02 | 1.20.58.340 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region | 0.54 | 49.0 | 4.15e-01 | 100.0% | 89.6% |
| 4epzA00 | 1.25.40.810 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › UpxZ | 0.53 | 46.0 | 4.02e-01 | 97.1% | 63.0% |
| 3nbxX03 | 1.20.58.1510 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.52 | 40.0 | 4.10e-01 | 98.0% | 85.1% |
| 4q5nA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.51 | 39.0 | 3.81e-01 | 100.0% | 75.0% |
| 4agsB04 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.51 | 44.0 | 4.05e-01 | 95.1% | 75.9% |
| 4l3tA03 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.50 | 44.0 | 3.47e-01 | 100.0% | 80.1% |
ECOD (50)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3505507 | 1134.1.1.0 ↗ | alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain | 0.76 | 49.0 | 5.80e-01 | 98.0% | 94.3% |
| 3489921 | 5054.1.1.2 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans | 0.69 | 49.0 | 3.50e-01 | 72.5% | 82.4% |
| 4036522 | 604.9.1.1 ↗ | alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p | 0.69 | 45.0 | 4.78e-01 | 100.0% | 75.6% |
| 3633107 | 5057.1.1.0 ↗ | alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore | 0.69 | 45.0 | 4.68e-01 | 100.0% | 71.6% |
| 3498448 | 604.3.1.0 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain | 0.69 | 49.0 | 5.43e-01 | 100.0% | 95.0% |
| 5071381 | 601.4.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains | 0.69 | 52.0 | 5.19e-01 | 100.0% | 77.1% |
| 3430175 | 601.4.1.68 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains › Rx_N | 0.68 | 52.0 | 4.64e-01 | 100.0% | 57.3% |
| 3879249 | 109.4.1.1647 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF28330 | 0.67 | 46.0 | 3.73e-01 | 98.0% | 38.4% |
| 3738969 | 109.10.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › Translin › Translin › Translin | 0.67 | 48.0 | 3.75e-01 | 100.0% | 35.0% |
| 5046472 | 604.3.1.0 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain | 0.66 | 49.0 | 5.12e-01 | 100.0% | 84.2% |
| 3615307 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.65 | 45.0 | 4.72e-01 | 99.0% | 76.8% |
| 3970945 | 601.4.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains | 0.64 | 52.0 | 4.97e-01 | 100.0% | 74.8% |
| 3341807 | 604.3.1.1 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG | 0.64 | 47.0 | 4.65e-01 | 100.0% | 71.8% |
| 3503534 | 5057.1.1.1 ↗ | alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neur_chan_memb | 0.63 | 47.0 | 4.15e-01 | 100.0% | 55.2% |
| 3333216 | 604.3.1.1 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG | 0.63 | 47.0 | 4.83e-01 | 100.0% | 84.2% |
| 3626530 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.62 | 49.0 | 5.07e-01 | 100.0% | 89.5% |
| 3828970 | 604.3.1.1 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG | 0.62 | 46.0 | 4.78e-01 | 100.0% | 84.2% |
| 4289864 | 601.25.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › TrmE connector domain › TrmE connector domain | 0.62 | 48.0 | 4.17e-01 | 100.0% | 55.3% |
| 4331100 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.62 | 46.0 | 4.81e-01 | 100.0% | 85.3% |
| 4031805 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.62 | 51.0 | 4.97e-01 | 99.0% | 80.9% |
| 3933439 | 601.25.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › TrmE connector domain › TrmE connector domain › MnmE_helical | 0.62 | 52.0 | 4.45e-01 | 100.0% | 57.5% |
| 3416318 | 5057.1.1.1 ↗ | alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neur_chan_memb | 0.61 | 45.0 | 4.26e-01 | 100.0% | 65.0% |
| 3240455 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.60 | 46.0 | 4.92e-01 | 100.0% | 92.2% |
| 4929564 | 5057.1.1.1 ↗ | alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neur_chan_memb | 0.60 | 45.0 | 4.20e-01 | 100.0% | 62.5% |
| 3276887 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.60 | 50.0 | 4.85e-01 | 100.0% | 79.1% |
| 4038749 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.59 | 52.0 | 4.97e-01 | 100.0% | 82.6% |
| 3801950 | 3755.4.1.0 ↗ | alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain | 0.59 | 41.0 | 3.31e-01 | 100.0% | 36.1% |
| 3481122 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.59 | 50.0 | 5.04e-01 | 100.0% | 92.0% |
| 4409486 | 5069.1.1.15 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cytochrom_C_asm | 0.59 | 49.0 | 3.55e-01 | 97.1% | 34.6% |
| 3579058 | 109.4.1.313 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › UTP20_N | 0.58 | 47.0 | 3.52e-01 | 97.1% | 36.3% |
| 3678146 | 604.3.1.1 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG | 0.58 | 46.0 | 4.17e-01 | 100.0% | 62.9% |
| 3901573 | 604.12.1.97 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › PMP22_Claudin | 0.58 | 46.0 | 4.54e-01 | 93.1% | 79.1% |
| 3274541 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.57 | 48.0 | 4.44e-01 | 100.0% | 70.8% |
| 4056284 | 601.25.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › TrmE connector domain › TrmE connector domain › MnmE_helical | 0.57 | 51.0 | 4.23e-01 | 100.0% | 57.4% |
| 1144341 | 5054.1.1.2 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans | 0.57 | 46.0 | 4.19e-01 | 100.0% | 64.0% |
| 3441715 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.57 | 50.0 | 4.88e-01 | 99.0% | 87.3% |
| 3178430 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.57 | 50.0 | 3.87e-01 | 100.0% | 43.9% |
| 3964502 | 5069.1.1.0 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes | 0.57 | 47.0 | 4.57e-01 | 99.0% | 81.8% |
| 3899930 | 603.1.1.1 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin | 0.55 | 50.0 | 3.97e-01 | 98.0% | 75.0% |
| 3695361 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.55 | 51.0 | 4.77e-01 | 100.0% | 81.6% |
| 3879381 | 603.2.1.1 ↗ | alpha bundles › STAT-like › STAT › STAT › STAT_alpha | 0.55 | 50.0 | 4.33e-01 | 100.0% | 83.2% |
| 3694938 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.55 | 48.0 | 3.40e-01 | 98.0% | 55.3% |
| 4012748 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.54 | 50.0 | 3.50e-01 | 100.0% | 53.9% |
| 3902977 | 604.1.1.67 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin_5 | 0.54 | 44.0 | 4.48e-01 | 99.0% | 91.0% |
| 3729492 | 601.4.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains | 0.53 | 49.0 | 4.29e-01 | 100.0% | 71.3% |
| 4939803 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.52 | 48.0 | 4.70e-01 | 100.0% | 98.2% |
| 3586369 | 5054.1.1.2 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans | 0.52 | 48.0 | 3.49e-01 | 100.0% | 39.3% |
| 3913373 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.51 | 43.0 | 4.06e-01 | 100.0% | 76.7% |
| 3236002 | 5054.1.1.59 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans, Ion_trans_2 | 0.51 | 47.0 | 3.41e-01 | 100.0% | 38.1% |
| 4355701 | 4121.1.1.2 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › MRS2-like | 0.51 | 46.0 | 3.32e-01 | 100.0% | 62.1% |
D2
high
residues 127-227
Domain cluster:
rep: p28__YP_009507959__Diodia_vein_chlorosis_virus__656520__D136-237
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ct9A01 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.58 | 33.0 | 2.69e-01 | 100.0% | 29.2% |
| 2j9wB00 | 1.20.120.1130 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Vps28 C-terminal domain | 0.51 | 39.0 | 3.95e-01 | 85.1% | 81.8% |
| 4w8iB02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.51 | 35.0 | 2.78e-01 | 72.3% | 83.0% |