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p26

Euk-Vir

Cordyline_virus_1

p26__YP_009506351__Cordyline_virus_1__937809

Identity

Accession:
YP_009506351 ↗
Protein ID:
p26
Kingdom:
euk

Quality

70.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 21-132
PDB
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2zdiB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.77 45.0 4.71e-01 77.7% 62.3%
2ougA00 3.30.70.940 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › NusG, N-terminal domain 0.76 31.0 2.87e-01 74.1% 29.8%
4hwdD00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.75 58.0 6.39e-01 100.0% 98.9%
1j1jA02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.74 53.0 5.96e-01 99.1% 97.6%
5j1hA01 1.20.58.1060 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.73 53.0 4.44e-01 99.1% 46.2%
2cwoA01 1.20.58.1200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › RNA silencing suppressor P21, N-terminal domain 0.73 47.0 5.72e-01 94.6% 100.0%
4hwhE00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.73 54.0 6.06e-01 100.0% 98.9%
1fpoC02 1.20.1280.20 Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain 0.72 51.0 5.60e-01 93.8% 89.0%
1m62A00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.72 50.0 5.62e-01 97.3% 93.1%
3axjB02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.71 49.0 5.45e-01 98.2% 92.9%
1skvA00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.71 36.0 4.50e-01 76.8% 82.8%
3ieeA02 1.20.58.820 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Uncharacterised protein PF12889, C-terminal DUF3829 0.70 52.0 5.38e-01 100.0% 83.5%
3ezhA00 1.20.120.960 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Histidine kinase NarX, sensor domain 0.69 47.0 4.68e-01 97.3% 67.5%
5mdtA00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.69 50.0 4.50e-01 98.2% 55.3%
1vcsA00 1.20.58.400 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins 0.69 54.0 5.65e-01 99.1% 90.2%
2iakA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.67 56.0 4.63e-01 100.0% 51.6%
4w8pA02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.67 52.0 4.94e-01 100.0% 70.8%
3r6nB01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 50.0 3.97e-01 100.0% 40.2%
2odmA00 1.10.287.750 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › SO2669-like 0.66 44.0 5.06e-01 99.1% 97.5%
3nvoB02 1.20.58.340 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region 0.65 59.0 5.87e-01 100.0% 92.2%
1sumB02 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.64 52.0 5.14e-01 100.0% 81.4%
4hz4A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.63 45.0 4.53e-01 91.1% 73.2%
1h6gA02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.63 49.0 4.81e-01 100.0% 75.0%
1yo7A00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.63 48.0 4.72e-01 98.2% 75.0%
1xwmA00 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.63 53.0 4.25e-01 100.0% 48.1%
3ubkB02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.63 45.0 4.37e-01 97.3% 67.2%
3l39A01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.62 52.0 4.25e-01 97.3% 50.0%
2gsqA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.62 45.0 4.63e-01 92.0% 79.6%
3anwA01 1.20.58.1030 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 43.0 4.36e-01 92.0% 72.6%
1st6A02 1.20.120.810 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Vinculin, Vh2 four-helix bundle 0.61 43.0 3.39e-01 100.0% 34.7%
3mq1A01 1.20.58.970 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 47.0 5.12e-01 95.5% 100.0%
2js5A00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.60 36.0 4.40e-01 76.8% 94.4%
3n3dB00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.60 41.0 3.07e-01 71.4% 72.5%
3pe0A02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 50.0 5.19e-01 100.0% 96.2%
8a0rA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.60 44.0 4.18e-01 98.2% 65.4%
3a7mA01 1.20.58.380 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Flagellar protein flit. 0.60 44.0 4.49e-01 100.0% 79.1%
3gehA02 1.20.120.430 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › tRNA modification GTPase MnmE domain 2 0.60 51.0 4.42e-01 98.2% 61.1%
1st6A04 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.60 45.0 4.48e-01 96.4% 76.9%
6kd7A00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.59 41.0 3.03e-01 72.3% 77.1%
1xzpA02 1.20.120.430 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › tRNA modification GTPase MnmE domain 2 0.59 49.0 4.28e-01 99.1% 60.2%
2zdiC00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.59 43.0 3.90e-01 75.9% 60.1%
6t0bc02 1.20.120.80 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c oxidase, subunit III, four-helix bundle 0.58 49.0 4.10e-01 100.0% 53.4%
2x0cA01 1.20.1420.10 Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain 0.58 50.0 4.31e-01 99.1% 59.6%
7tj9A01 1.20.120.350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C 0.58 43.0 4.47e-01 92.9% 82.1%
3u9jA00 1.20.120.520 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › nmb1532 protein domain like 0.56 44.0 3.93e-01 100.0% 59.9%
2yf4F00 1.10.3420.10 Mainly Alpha › Orthogonal Bundle › putative ntp pyrophosphohydrolase like fold › putative ntp pyrophosphohydrolase like domain 0.56 34.0 3.14e-01 81.2% 46.9%
4lunU00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.53 49.0 3.52e-01 100.0% 59.8%
2uvaG01 1.20.1050.120 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.53 45.0 4.21e-01 91.1% 88.2%
4kb2A01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.53 42.0 4.34e-01 93.8% 89.0%
4l8iB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.51 44.0 4.43e-01 92.0% 92.0%
2fupA00 1.20.58.300 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › FlgN-like 0.50 44.0 4.26e-01 95.5% 88.2%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4991159 604.5.1.2 alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU 0.78 50.0 4.43e-01 96.4% 45.6%
3718498 604.6.1.0 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.78 58.0 6.41e-01 100.0% 95.6%
3684033 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.75 48.0 3.63e-01 96.4% 28.1%
4357455 650.1.1.1 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.72 38.0 4.28e-01 85.7% 65.9%
1518845 601.41.1.1 alpha bundles › Four-helical up-and-down bundle › C-terminal domain in uncharacterized DUF3829-like protein › C-terminal domain in uncharacterized DUF3829-like protein › DUF3829_2nd 0.69 51.0 5.25e-01 100.0% 80.4%
3240455 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.69 51.0 5.61e-01 92.9% 94.4%
3499494 109.4.1.522 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RPAP1_C 0.68 60.0 3.59e-01 93.8% 15.8%
3264174 622.4.1.58 alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related › PF26756 0.68 48.0 5.59e-01 92.0% 100.0%
3236489 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.67 51.0 4.79e-01 98.2% 65.9%
3273217 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.66 51.0 5.45e-01 100.0% 96.8%
3233698 5057.1.1.0 alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore 0.65 47.0 4.54e-01 100.0% 67.2%
3801688 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.65 53.0 5.46e-01 97.3% 90.5%
3792009 604.1.1.98 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin_Anc-1 0.65 55.0 4.55e-01 100.0% 54.1%
3221955 601.25.1.0 alpha bundles › Four-helical up-and-down bundle › TrmE connector domain › TrmE connector domain 0.65 48.0 4.33e-01 95.5% 56.5%
2393178 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.64 50.0 5.42e-01 98.2% 98.9%
3706306 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.64 49.0 4.81e-01 99.1% 75.0%
3585432 604.1.1.98 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin_Anc-1 0.63 52.0 5.17e-01 97.3% 84.3%
3662427 3684.1.1.0 alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like 0.62 43.0 4.28e-01 100.0% 66.7%
4011910 633.23.1.9 alpha bundles › Bromodomain-like › Claudin › Claudin › SUR7 0.62 53.0 4.25e-01 100.0% 48.6%
4987042 601.4.1.0 alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains 0.61 48.0 4.52e-01 98.2% 69.6%
3454604 1065.1.1.1 alpha bundles › SPX domain › SPX domain › SPX domain › SPX 0.60 57.0 4.84e-01 100.0% 68.8%
3940793 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.60 53.0 5.30e-01 100.0% 92.2%
3608129 601.4.1.0 alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains 0.60 47.0 4.60e-01 95.5% 76.0%
3683651 601.1.1.54 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › DUF4220 0.60 45.0 3.66e-01 100.0% 40.4%
3934654 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.59 54.0 4.55e-01 97.3% 62.2%
3387116 601.14.1.1 alpha bundles › Four-helical up-and-down bundle › Hemerythrin › Hemerythrin › Hemerythrin 0.58 44.0 4.18e-01 96.4% 66.7%
3814336 603.2.1.13 alpha bundles › STAT-like › STAT › STAT › NET2A_C 0.58 54.0 4.80e-01 100.0% 86.5%
3704526 604.5.1.0 alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) 0.58 54.0 4.69e-01 99.1% 82.4%
3488291 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.58 49.0 5.10e-01 99.1% 99.0%
3462100 604.1.1.102 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › DUF8324 0.58 53.0 5.23e-01 100.0% 92.5%
3178852 633.23.1.9 alpha bundles › Bromodomain-like › Claudin › Claudin › SUR7 0.57 49.0 3.97e-01 97.3% 49.5%
4982604 1065.1.1.0 alpha bundles › SPX domain › SPX domain › SPX domain 0.57 53.0 4.63e-01 100.0% 86.9%
3174597 633.23.1.9 alpha bundles › Bromodomain-like › Claudin › Claudin › SUR7 0.57 49.0 3.79e-01 97.3% 43.8%
3617270 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.56 52.0 4.80e-01 100.0% 88.6%
4091932 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.56 50.0 4.76e-01 99.1% 97.0%
5002102 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.56 41.0 3.48e-01 75.9% 60.6%
3176998 633.23.1.12 alpha bundles › Bromodomain-like › Claudin › Claudin › Fig1 0.56 50.0 3.98e-01 100.0% 48.7%
3373206 3684.1.1.0 alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like 0.56 50.0 3.64e-01 99.1% 91.6%
3470322 633.23.1.4 alpha bundles › Bromodomain-like › Claudin › Claudin › Claudin_2 0.55 48.0 3.92e-01 100.0% 51.7%
4011320 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.55 50.0 4.01e-01 100.0% 51.4%
3491108 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.55 50.0 4.56e-01 100.0% 95.3%
3864224 603.1.1.103 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF29732 0.55 50.0 4.39e-01 100.0% 78.2%
3807335 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.55 50.0 4.89e-01 97.3% 97.5%
3177591 633.23.1.9 alpha bundles › Bromodomain-like › Claudin › Claudin › SUR7 0.55 47.0 3.73e-01 100.0% 45.7%
3742353 633.23.1.9 alpha bundles › Bromodomain-like › Claudin › Claudin › SUR7 0.55 48.0 3.81e-01 100.0% 47.4%
4977534 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.54 49.0 4.63e-01 100.0% 91.9%
4022191 633.23.1.9 alpha bundles › Bromodomain-like › Claudin › Claudin › SUR7 0.54 44.0 3.52e-01 92.9% 44.0%
3789224 633.23.1.9 alpha bundles › Bromodomain-like › Claudin › Claudin › SUR7 0.54 49.0 3.93e-01 100.0% 52.1%
3788044 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.54 49.0 3.78e-01 100.0% 46.3%
3203836 633.23.1.9 alpha bundles › Bromodomain-like › Claudin › Claudin › SUR7 0.54 45.0 3.51e-01 96.4% 42.5%
4017840 633.23.1.9 alpha bundles › Bromodomain-like › Claudin › Claudin › SUR7 0.53 49.0 3.63e-01 100.0% 42.9%
3787279 633.23.1.9 alpha bundles › Bromodomain-like › Claudin › Claudin › SUR7 0.53 49.0 3.62e-01 100.0% 42.1%
3686122 633.23.1.9 alpha bundles › Bromodomain-like › Claudin › Claudin › SUR7 0.53 47.0 3.72e-01 100.0% 46.6%
4947351 601.33.1.0 alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain 0.53 46.0 3.96e-01 95.5% 82.9%
3171401 633.23.1.9 alpha bundles › Bromodomain-like › Claudin › Claudin › SUR7 0.52 47.0 3.80e-01 100.0% 71.4%
5074626 268.1.1.1 a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related › SCP2 0.52 28.0 2.74e-01 93.8% 45.6%
3178492 633.23.1.9 alpha bundles › Bromodomain-like › Claudin › Claudin › SUR7 0.51 44.0 3.30e-01 94.6% 41.1%
3788870 633.23.1.9 alpha bundles › Bromodomain-like › Claudin › Claudin › SUR7 0.51 45.0 3.78e-01 100.0% 62.0%
D2 high residues 138-220
PDB