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p2_protein
Euk-VirBlackberry_chlorotic_ringspot_virus
p2_protein__YP_002308570__Blackberry_chlorotic_ringspot_virus__339420
Identity
- Accession:
- YP_002308570 ↗
- Protein ID:
- p2_protein
- Kingdom:
- euk
Quality
68.2
mean pLDDT
Taxonomy
Orthornavirae›
Kitrinoviricota›
Alsuviricetes›
Martellivirales›
Bromoviridae›
Ilarvirus›
Blackberry_chlorotic_ringspot_virus
TaxID: 339420
Cluster
View cluster (23 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-75_89-123
D2
medium
residues 217-256_291-308
D3
medium
residues 326-626
Domain cluster:
rep: hypothetical_protein_3__YP_009345007__Wuhan_spider_virus_8__1923757__D1-105_147-200
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00978.27 best | RdRP_2 | 364.2 | 1.40e-108 | 100.0% | 67.5% |
D4
medium
residues 627-719
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4axzA00 | 1.10.3160.10 | Mainly Alpha › Orthogonal Bundle › Bbcrasp-1 › Bbcrasp-1 | 0.58 | 41.0 | 3.18e-01 | 74.2% | 61.5% |
| 3mekA04 | 1.25.40.970 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.53 | 30.0 | 3.23e-01 | 97.8% | 62.5% |
| 4okvE00 | 6.10.140.1890 | Special › Helix non-globular › Helix Hairpins › | 0.52 | 33.0 | 3.76e-01 | 83.9% | 90.8% |
| 1q90B00 | 1.20.810.10 | Mainly Alpha › Up-down Bundle › Cytochrome Bc1 Complex; Chain C › Cytochrome Bc1 Complex; Chain C | 0.51 | 37.0 | 2.93e-01 | 77.4% | 67.0% |
| 4iaoC01 | 6.10.140.1820 | Special › Helix non-globular › Helix Hairpins › | 0.50 | 35.0 | 3.90e-01 | 91.4% | 98.5% |
| 3fppA03 | 6.10.140.1990 | Special › Helix non-globular › Helix Hairpins › | 0.50 | 33.0 | 3.41e-01 | 91.4% | 70.5% |
| 2q0oC00 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.50 | 34.0 | 3.52e-01 | 91.4% | 75.6% |