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p2b_protein

Euk-Vir

Blackberry_chlorotic_ringspot_virus

p2b_protein__YP_002308571__Blackberry_chlorotic_ringspot_virus__339420

Identity

Accession:: YP_002308571 ↗
Protein ID:: p2b_protein
Kingdom:: euk

Quality

59.0 mean pLDDT

Taxonomy

Orthornavirae› Kitrinoviricota› Alsuviricetes› Martellivirales› Bromoviridae› Ilarvirus› Blackberry_chlorotic_ringspot_virus

TaxID: 339420

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 109-207

PDB

Domain cluster: representative

CATH (10)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
6s2wA01	3.30.2260.10	Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary	0.61	44.0	4.80e-01	79.8%	91.5%
2nmlA00	3.30.2260.10	Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary	0.59	46.0	4.63e-01	82.8%	91.0%
7ejoB01	3.30.2260.10	Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary	0.58	43.0	4.69e-01	79.8%	96.4%
1td6A02	3.30.1790.10	Alpha Beta › 2-Layer Sandwich › hypothetical protein mp506/mpn330, domain 2 › hypothetical protein mp506/mpn330, domain 2	0.58	35.0	3.66e-01	77.8%	65.2%
3fqmA01	2.20.25.210	Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Hepatitis C NS5A, domain 1B	0.57	26.0	3.24e-01	70.7%	67.2%
1y8qD03	3.10.290.20	Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › Ubiquitin-like 2 activating enzyme e1b. Chain: B, domain 3	0.57	40.0	3.96e-01	85.9%	68.6%
2rp4A00	6.10.280.60	Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Transcription factor p53, C-terminal domain	0.55	36.0	4.06e-01	85.9%	93.0%
4nk2A01	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.51	34.0	3.02e-01	72.7%	45.9%
2f4mA02	2.20.25.10	Mainly Beta › Single Sheet › N-terminal domain of TfIIb ›	0.51	23.0	3.05e-01	76.8%	80.0%
1n9eA01	2.70.98.20	Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain	0.50	42.0	2.75e-01	94.9%	69.0%

ECOD (11)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3605664	7516.1.1.0 ↗	a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases	0.63	44.0	3.09e-01	72.7%	94.3%
None	—		0.60	46.0	4.70e-01	81.8%	93.7%
3923043	4326.1.1.1 ↗	a+b two layers › ERH-like › ERH-like › ERH-like › ER	0.59	46.0	4.59e-01	81.8%	95.0%
2896602	4326.1.1.1 ↗	a+b two layers › ERH-like › ERH-like › ERH-like › ER	0.59	46.0	4.60e-01	82.8%	91.0%
4028523	4326.1.1.1 ↗	a+b two layers › ERH-like › ERH-like › ERH-like › ER	0.59	46.0	4.75e-01	83.8%	95.8%
2771923	4326.1.1.1 ↗	a+b two layers › ERH-like › ERH-like › ERH-like › ER	0.59	45.0	4.59e-01	81.8%	86.3%
4655	4980.1.1.1 ↗	alpha superhelices › Middle domain of Hypothetical protein MPN330 › Middle domain of Hypothetical protein MPN330 › Middle domain of Hypothetical protein MPN330 › DUF3196	0.58	35.0	3.66e-01	77.8%	65.2%
5004031	873.1.1.1 ↗	a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › V4R	0.55	41.0	3.55e-01	79.8%	77.0%
4649238	2484.1.1.178 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › SHS2_FTSA+FtsA	0.55	40.0	2.66e-01	75.8%	35.1%
4814696	7579.1.1.34 ↗	a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Tannase	0.55	48.0	3.08e-01	98.0%	56.6%
3407169	101.1.2.178 ↗	alpha arrays › HTH › HTH › winged helix domain › HTH_61	0.50	40.0	3.93e-01	86.9%	82.9%