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p30_protein

Euk-Vir

Maize_necrotic_streak_virus

p30_protein__YP_459921__Maize_necrotic_streak_virus__137556

Identity

Accession:
YP_459921 ↗
Protein ID:
p30_protein
Kingdom:
euk

Quality

56.1 mean pLDDT

Taxonomy

Orthornavirae› Kitrinoviricota› Tolucaviricetes› Tolivirales› Tombusviridae› Zeavirus› Maize_necrotic_streak_virus

TaxID: 137556

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 31-136
PDB
D2 medium residues 186-267
PDB
Domain cluster: rep: hypothetical_protein_1__YP_009342274__Wenzhou_tombus-like_virus_3__1923673__D47-138
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF08500.17 best Tombus_P33 95.8 4.10e-27 79.3% 47.4%
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ii2A02 3.40.50.12550 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Ubiquitin-activating enzyme E1, inactive adenylation domain, subdomain 2 0.79 63.0 4.51e-01 84.1% 59.9%
1iv8A04 1.10.10.470 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Maltooligosyl trehalose synthase; domain 4 0.71 55.0 5.26e-01 85.4% 83.5%
1ls1A01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.66 46.0 4.48e-01 72.0% 75.3%
7vw6B01 1.10.10.1590 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E 0.65 39.0 4.19e-01 73.2% 71.6%
1f2eA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.64 34.0 3.09e-01 96.3% 39.6%
1vf7A03 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.64 36.0 4.15e-01 79.3% 76.7%
3c7jA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 41.0 4.05e-01 74.4% 60.4%
1t98A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 48.0 4.79e-01 84.1% 89.7%
2gf4A00 1.20.1270.110 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Uncharacterised protein family UPF0058 0.59 42.0 4.15e-01 74.4% 79.5%
1ldjA03 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.59 44.0 4.01e-01 81.7% 67.0%
2w02B01 1.10.150.640 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › AcsD, thumb domain, helical bundle 0.58 42.0 4.41e-01 76.8% 86.5%
1wp7A00 1.10.287.770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like 0.57 36.0 3.93e-01 79.3% 79.7%
2wy4A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.56 44.0 3.78e-01 87.8% 97.1%
3dd7C00 1.20.120.1870 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Fic/DOC protein, Fido domain 0.56 38.0 3.43e-01 74.4% 48.4%
2odmA00 1.10.287.750 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › SO2669-like 0.56 32.0 3.28e-01 74.4% 57.0%
2doeA00 1.10.10.440 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain 0.55 47.0 4.69e-01 96.3% 97.6%
4gx0A01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.54 44.0 4.12e-01 89.0% 77.7%
1pq4A01 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.54 41.0 3.40e-01 82.9% 90.1%
7wj9A01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.53 38.0 2.63e-01 91.5% 20.5%
5mlc900 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.52 45.0 4.20e-01 97.6% 99.1%
2nr9A00 1.20.1540.10 Mainly Alpha › Up-down Bundle › Rhomboid-like fold › Rhomboid-like 0.52 45.0 3.46e-01 98.8% 51.0%
3uumA00 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 44.0 3.93e-01 97.6% 88.5%
3h5qA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.51 30.0 3.17e-01 73.2% 65.7%
7s0rB01 1.20.81.20 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › 0.50 37.0 3.89e-01 78.0% 92.1%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4928310 4953.1.1.0 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.79 57.0 5.46e-01 75.6% 84.9%
4489939 101.35.1.4 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 0.75 48.0 5.49e-01 72.0% 90.0%
4580730 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.72 49.0 5.52e-01 72.0% 96.7%
4426344 101.35.1.4 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 0.72 52.0 5.59e-01 76.8% 92.6%
3694079 101.1.2.290 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF3759 0.70 57.0 5.00e-01 87.8% 91.7%
3643885 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.70 54.0 5.71e-01 82.9% 100.0%
4026529 2003.1.9.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins › ThiF 0.70 50.0 3.37e-01 75.6% 34.2%
3816224 101.1.17.2 ↗ alpha arrays › HTH › HTH › FF domain › FF 0.67 49.0 5.19e-01 84.1% 90.0%
3246361 101.1.17.18 ↗ alpha arrays › HTH › HTH › FF domain › FF_PRPF40A 0.67 50.0 5.38e-01 86.6% 100.0%
3518519 101.1.17.18 ↗ alpha arrays › HTH › HTH › FF domain › FF_PRPF40A 0.66 46.0 5.14e-01 82.9% 100.0%
4577554 101.11.1.1 ↗ alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.65 51.0 4.94e-01 86.6% 78.9%
4512923 181.1.1.1 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N 0.65 48.0 4.75e-01 76.8% 75.3%
5048577 621.1.1.0 ↗ alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain 0.65 51.0 5.16e-01 86.6% 100.0%
3571858 4198.1.1.0 ↗ alpha arrays › TerB-like › TerB-like › TerB-like 0.64 44.0 3.72e-01 72.0% 43.8%
3510492 604.12.1.60 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Hpre_diP_synt_I 0.62 47.0 4.47e-01 82.9% 84.0%
3668680 101.1.1.65 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_4 0.61 47.0 4.46e-01 84.1% 97.0%
3899060 188.1.1.1 ↗ alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Hormone_recep 0.61 54.0 3.80e-01 100.0% 33.1%
4486950 2498.1.1.10 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 0.60 44.0 2.93e-01 79.3% 41.7%
3454652 180.1.1.1 ↗ alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › PAP2 0.60 52.0 4.02e-01 98.8% 56.8%
4177832 621.1.1.2 ↗ alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Smg8_Smg9 0.58 46.0 4.44e-01 87.8% 87.4%
3652636 101.1.1.295 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_70 0.57 45.0 4.60e-01 89.0% 91.3%
5055960 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.56 41.0 3.65e-01 76.8% 78.3%
4828003 310.2.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.56 48.0 4.23e-01 95.1% 95.9%
3589591 601.32.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › FusB family N-terminal domain › FusB family N-terminal domain › EF-G-binding_N 0.56 38.0 3.92e-01 72.0% 75.0%
5011074 1111.1.1.8 ↗ alpha complex topology › Trimeric intracellular cation (TRIC) channel › Trimeric intracellular cation (TRIC) channel › Trimeric intracellular cation (TRIC) channel › DUF2070 0.55 44.0 3.58e-01 89.0% 44.6%
3712740 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 44.0 3.09e-01 90.2% 60.0%
5032521 7014.1.1.1 ↗ alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › BacA 0.54 46.0 3.96e-01 96.3% 83.0%
4993210 3755.3.1.635 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › PHA_synth_III_E 0.54 44.0 3.35e-01 87.8% 52.4%
5049680 4163.1.1.0 ↗ alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like 0.53 44.0 4.04e-01 92.7% 71.8%
3630187 3831.1.1.8 ↗ alpha bundles › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › Moulting_cycle 0.52 31.0 3.21e-01 72.0% 61.3%
3290961 106.1.1.11 ↗ alpha arrays › Globin-like › Globin-like › Globin-like › RsbRD_N 0.52 47.0 3.79e-01 100.0% 61.9%
142120 106.1.1.5 ↗ alpha arrays › Globin-like › Globin-like › Globin-like › HisK_N 0.52 43.0 3.58e-01 93.9% 56.9%
5075806 4995.1.1.1 ↗ alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 0.51 36.0 3.73e-01 76.8% 81.2%
4873678 150.2.1.1 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Cobalamin adenosyltransferase › Cobalamin adenosyltransferase › Cob_adeno_trans 0.50 44.0 3.56e-01 100.0% 56.6%